BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0646.p
         (232 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313552|ref|YP_003777644.1| ABC transporter periplasmic/sur...   369   e-103
gi|300310744|ref|YP_003774836.1| ABC transporter periplasmic/sur...   121   5e-29

>gi|300313552|ref|YP_003777644.1| ABC transporter
           periplasmic/surface lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 379

 Score =  369 bits (947), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 189/210 (90%), Positives = 195/210 (92%)

Query: 1   MKISRRASIAMLATLAAATLIGCGKKEEATPAAAPAPAAAAPAAAEPLKVAFVYIGPVGD 60
           MKISRRAS+ MLATLAAATLIGCGKKEE   AA  A  AAA  AA+PLKVAFVYIGPVGD
Sbjct: 1   MKISRRASLTMLATLAAATLIGCGKKEEPAAAAPAAAPAAAAPAADPLKVAFVYIGPVGD 60

Query: 61  AGWTFAHDNGRKAVEAKFGDKVKTTFVENVPESAADAERVMRQLATDGNKLIFGTTFGYM 120
           AGWTFAHD GRKAVE KFGDKVKTTFVEN+PESAADAERV RQLATDGNKLIFGTTFGYM
Sbjct: 61  AGWTFAHDKGRKAVEEKFGDKVKTTFVENIPESAADAERVFRQLATDGNKLIFGTTFGYM 120

Query: 121 EAMLKVAKEFPDVKFEHATGFKTADNLAQYDVRTYEGAYLAGVVAGKMSKSGKLGVVASV 180
           EAMLKVAKEFPDVKFEHATGFKTADNLAQYDVRTYEGAYLAGVVAGKMSKSGKLGVVASV
Sbjct: 121 EAMLKVAKEFPDVKFEHATGFKTADNLAQYDVRTYEGAYLAGVVAGKMSKSGKLGVVASV 180

Query: 181 PIPEVVRNIDAFTLGARSINPKATTRVVQV 210
           PIPEV+RNID+FTLGARS+NPKATT VV V
Sbjct: 181 PIPEVIRNIDSFTLGARSVNPKATTAVVWV 210


>gi|300310744|ref|YP_003774836.1| ABC transporter
           periplasmic/surface lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 365

 Score =  121 bits (303), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 70/170 (41%), Positives = 100/170 (58%), Gaps = 7/170 (4%)

Query: 44  AAEPLKVAFVYIGPVGDAGWTFAHDNGRKAVEAKFGDKVKTTFVENVPESAADAERVMRQ 103
           AA PL V F+Y+G   D G+  +H      ++   G  VK    E VPE+ A  + +   
Sbjct: 26  AAGPLTVGFIYVGARDDFGYNQSHAQAAAVIKKMPG--VKVIEEEKVPETVAVQKTMEAM 83

Query: 104 LATDGNKLIFGTTFGYME-AMLKVAKEFPDVKFEHATGFKTAD----NLAQYDVRTYEGA 158
           +  DG  L+F T+FGY +  +LK+A+++P V+  H  G  TA     N+  Y     E  
Sbjct: 84  IQQDGATLLFPTSFGYFDPHVLKIAEKYPKVRIAHCGGLWTAGKHPMNVGSYFGYIEECE 143

Query: 159 YLAGVVAGKMSKSGKLGVVASVPIPEVVRNIDAFTLGARSINPKATTRVV 208
           YL+GVVAG MSKS KL  +A+ PIP+V+RNI+AFTLGA+S++P  T  V+
Sbjct: 144 YLSGVVAGYMSKSKKLAFIAAKPIPQVLRNINAFTLGAQSVDPAITCHVI 193


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.130    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 595,531
Number of extensions: 21801
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 2
Length of query: 232
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 150
Effective length of database: 1,231,600
Effective search space: 184740000
Effective search space used: 184740000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)