BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0644.p
         (362 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313550|ref|YP_003777642.1| ABC transporter permease [Herba...   613   e-177

>gi|300313550|ref|YP_003777642.1| ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 364

 Score =  613 bits (1581), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 317/358 (88%), Positives = 339/358 (94%)

Query: 4   SLPFRLELRGVPSRRMTYLSPVIAIILTLLLGALLFMALGKDPIAGLKVFLVDPFSSRRA 63
           S P RLELRG PSR MTYLSPVIAI+ TLLLGALLF+ALGKDP+AGLKVFL+DPF+ +RA
Sbjct: 6   SFPLRLELRGAPSRTMTYLSPVIAIVATLLLGALLFLALGKDPLAGLKVFLIDPFNGKRA 65

Query: 64  ISELLLKSVPLILCALGLAVCFRASIWNIGAEGQFTVGALCAGAMLVWIDVPDHAIPGGL 123
           ISELLLKSVPLILCALGLAVCFRASIWNIGAEGQFTVGALC+GAMLVW+DVP H + GG+
Sbjct: 66  ISELLLKSVPLILCALGLAVCFRASIWNIGAEGQFTVGALCSGAMLVWLDVPGHGVSGGM 125

Query: 124 GLILMIVAGVIGGAFWAGITALLRDKFNANEILVSLMLTYVAQLLLMYAVNGPLKDPNGM 183
           GL+LMIVAGVIGGA WA ITA LRD+FNANEILVSLMLTYVAQLLLM+AVNGPLKDPNGM
Sbjct: 126 GLVLMIVAGVIGGALWAAITAFLRDQFNANEILVSLMLTYVAQLLLMWAVNGPLKDPNGM 185

Query: 184 NFPQSKVFSSEFMLPMLMSGTRLHIGFAVTIVAAIVMAVFMMRSFRGFSLMVGGVAPHAA 243
           NFPQSKVFSSEFMLP L+SGTRLHIGFAV IVAA++MA+FMMRS RGFSLMVGGVAPHAA
Sbjct: 186 NFPQSKVFSSEFMLPTLISGTRLHIGFAVAIVAAVLMAIFMMRSLRGFSLMVGGVAPHAA 245

Query: 244 RYAGFSSRNALWVSLLISGGFAGLAGAFEIAGPIGQLLPSVSPGYGFAAIIVAFIGRLHP 303
           RYAGFS+R+ALWVSLLISG FAGLAGAFEIAGPIGQLLPSVSPGYGFAAIIVAFIGRLHP
Sbjct: 246 RYAGFSARSALWVSLLISGAFAGLAGAFEIAGPIGQLLPSVSPGYGFAAIIVAFIGRLHP 305

Query: 304 IGAVFGGLIMSLLYLGGELAQSRLGLPSAITGVFQGMLLFLLLACDTLIDYRLRWKQQ 361
           IGA+ GGLIMSLLYLGGELAQSRLGLPSAITGVFQGMLLFLLLACDTLIDYRL W ++
Sbjct: 306 IGAILGGLIMSLLYLGGELAQSRLGLPSAITGVFQGMLLFLLLACDTLIDYRLAWNKK 363


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.145    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,113,381
Number of extensions: 47010
Number of successful extensions: 259
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 260
Number of HSP's successfully gapped: 3
Length of query: 362
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 276
Effective length of database: 1,212,660
Effective search space: 334694160
Effective search space used: 334694160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)