BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0641.p (275 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313547|ref|YP_003777639.1| nitrate/sulfonate/bicarbonate A... 473 e-135 gi|300309802|ref|YP_003773894.1| nitrate/sulfonate/bicarbonate A... 189 3e-49 gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate A... 176 1e-45 gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 176 2e-45 gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 173 1e-44 >gi|300313547|ref|YP_003777639.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 473 bits (1217), Expect = e-135, Method: Compositional matrix adjust. Identities = 225/260 (86%), Positives = 240/260 (92%) Query: 16 ADTFIDFRRVFLSYDGSDEFAVEDISLQTKQGEFIAIVGPSGCGKSTFMKLATGLKRPTR 75 ++ F+DFR V+L+YDG+ EFAVEDI LQT+ GEFIAIVGPSGCGKSTFMKLATGLK+P R Sbjct: 2 SEPFVDFRHVYLAYDGAAEFAVEDIDLQTRAGEFIAIVGPSGCGKSTFMKLATGLKQPNR 61 Query: 76 GSISIAGADVTGPLKFVGMAFQAPTLLPWRTTLDNVLLPLEIVEPYRRDFKKNKAQYAER 135 GS+ I G VTGPLKFVGMAFQAPTLLPWRTTLDNVLLPLEIVEPYRRDFK+ KA+Y ER Sbjct: 62 GSVVIDGQTVTGPLKFVGMAFQAPTLLPWRTTLDNVLLPLEIVEPYRRDFKQKKAEYTER 121 Query: 136 ALKLLKTVGLDGYADKFPWELSGGMQQRASICRALIHEPRMLLLDEPFGALDAFTREELW 195 AL LLKTVGLDGYADKFPW+LSGGMQQRASICRALIHEP+MLLLDEPFGALDAFTREELW Sbjct: 122 ALSLLKTVGLDGYADKFPWQLSGGMQQRASICRALIHEPKMLLLDEPFGALDAFTREELW 181 Query: 196 CVLRDLWTERKFNVILVTHDLREAAFLADTIYVMSKRPGRIVARKENPLPRPRELELTYT 255 CVLRDLW ER+FNVILVTHDLREAAFLADTIYVMSKRPGRIV R+ENPLPRP LE TYT Sbjct: 182 CVLRDLWAERRFNVILVTHDLREAAFLADTIYVMSKRPGRIVVRRENPLPRPCPLETTYT 241 Query: 256 DPFNALVHELREHIGRVRNT 275 D FNALVHELREHIG VRNT Sbjct: 242 DGFNALVHELREHIGHVRNT 261 >gi|300309802|ref|YP_003773894.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 278 Score = 189 bits (479), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 101/237 (42%), Positives = 139/237 (58%), Gaps = 10/237 (4%) Query: 36 AVEDISLQTKQGEFIAIVGPSGCGKSTFMKLATGLKRPTRGSISIAG---ADVTGPLKFV 92 A++++ L +GEF++++GPSGCGKST +K+ GL+ P+ G I G A V P + + Sbjct: 35 ALDEVRLDIGRGEFVSLLGPSGCGKSTLLKMFAGLEEPSHGHIRWWGGNLATVGTPERTL 94 Query: 93 GMAFQAPTLLPWRTTLDNVLLPLEIVEPYRRDFKKNKAQYAERALKLLKTVGLDGYADKF 152 M FQ TL+PW T NV LPL++ R AQ R LK VGL+ + Sbjct: 95 AMVFQEATLMPWATVEQNVRLPLDLRHVPR-------AQADARVAASLKRVGLESFHAVL 147 Query: 153 PWELSGGMQQRASICRALIHEPRMLLLDEPFGALDAFTREELWCVLRDLWTERKFNVILV 212 P ELSGGMQ RASI RAL P +LL+DEPFGALD FTR +L LRD+W+ + V+ V Sbjct: 148 PRELSGGMQMRASIARALATSPNLLLMDEPFGALDEFTRNKLDADLRDIWSRQDLTVVFV 207 Query: 213 THDLREAAFLADTIYVMSKRPGRIVARKENPLPRPRELELTYTDPFNALVHELREHI 269 TH + EA FL+ + VM+ RPGR++A P PR+ + PF L +++ Sbjct: 208 THSIYEAVFLSSRVIVMAARPGRVIADVAIDAPGPRDEAFRMSAPFMQYCKTLSDYL 264 >gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 275 Score = 176 bits (447), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 96/236 (40%), Positives = 138/236 (58%), Gaps = 12/236 (5%) Query: 20 IDFRRV---FLSYDGSDEFAVEDISLQTKQGEFIAIVGPSGCGKSTFMKLATGLKRPTRG 76 I+ R V F++ DG A+ D S+ +GEF+A+VGP+GCGKST + L TGL +PT G Sbjct: 22 IELRNVSCRFITADGRATVALRDFSMSVARGEFVAVVGPTGCGKSTTLSLITGLLKPTLG 81 Query: 77 SISIAGADVTGPLKFVGMAFQAPTLLPWRTTLDNVLL-PLEIVEPYRRDFKKNKAQYAER 135 + + G V G +G FQ + PWR+ +NV PL +P KAQ Sbjct: 82 EVRVMGQPVNGIDPRIGFVFQNDAVFPWRSVRENVAAGPLFRGQP--------KAQAHAL 133 Query: 136 ALKLLKTVGLDGYADKFPWELSGGMQQRASICRALIHEPRMLLLDEPFGALDAFTREELW 195 A + ++ VGLD + D +P +LSGGM++R ++ + I+ P +LL+DEPF ALD TR + Sbjct: 134 ADEWIRRVGLDKFGDHYPHQLSGGMRKRVALAQTFINSPEILLMDEPFSALDMQTRTLMQ 193 Query: 196 CVLRDLWTERKFNVILVTHDLREAAFLADTIYVMSKRPGRIVARKENPLPRPRELE 251 L LW+ +V+ VTHDL EA LAD +YV++ RP + + LPRPR +E Sbjct: 194 DELLRLWSAHSGSVVFVTHDLEEAIALADKVYVLTARPATLKSVYPIDLPRPRVME 249 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 176 bits (446), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 93/206 (45%), Positives = 128/206 (62%), Gaps = 7/206 (3%) Query: 32 SDEFAVEDISLQTKQGEFIAIVGPSGCGKSTFMKLATGLKRPTRGSISIAGADVTGPLKF 91 D +E+ + + GE +A+VGPSGCGKST + +A GL++P+ GS++ G + GP Sbjct: 13 GDLHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGSVAGDGQTIRGPHPE 72 Query: 92 VGMAFQAPTLLPWRTTLDNVLLPLEIVEPYRRDFKKNKAQYAERALKLLKTVGLDGYADK 151 + FQ L PW T NV L LE + K KA AE+A L+ V L G+ Sbjct: 73 RTLMFQENALYPWLTLQQNVALALEF-----QSVDKKKA--AEQARVWLENVKLKGFEHY 125 Query: 152 FPWELSGGMQQRASICRALIHEPRMLLLDEPFGALDAFTREELWCVLRDLWTERKFNVIL 211 +P ++SGGM+QRA++ RA I +P+ LLLDEPFGALDA TR L LRDL ++ V+L Sbjct: 126 YPHQVSGGMRQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALRDLIRQQGPTVVL 185 Query: 212 VTHDLREAAFLADTIYVMSKRPGRIV 237 VTHD+ EA FLAD I+V S RP +++ Sbjct: 186 VTHDVDEALFLADRIFVFSPRPAKVL 211 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 173 bits (439), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 102/248 (41%), Positives = 136/248 (54%), Gaps = 14/248 (5%) Query: 26 FLSYDGSDEFAVEDISLQTKQGEFIAIVGPSGCGKSTFMKLATGLKRPTRGSISIAGADV 85 F D A++ +SL G F+ +G SGCGKST + G + G IS+ G V Sbjct: 11 FSGRDKQRVHALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSEGRISLDGQPV 70 Query: 86 TGPLKFVGMAFQAPTLLPWRTTLDNVLLPLEIVEPYRRDFKKNKAQYAERALKLLKTVGL 145 +GP G+ FQ +LLPW++ DNV L L+ + D + ERA +LL+ VGL Sbjct: 71 SGPGAERGVVFQKDSLLPWKSVQDNVALGLKFAGVSKSDSR-------ERAQELLRLVGL 123 Query: 146 DGYADKFPWELSGGMQQRASICRALIHEPRMLLLDEPFGALDAFTREELWCVLRDLWTER 205 +A P+ELSGGM+QR + RAL P++LL+DEPFGALD+ TRE++ +L +W Sbjct: 124 QDFARAAPYELSGGMRQRVGLARALAPNPKILLMDEPFGALDSMTREQMQELLVSVWART 183 Query: 206 KFNVILVTHDLREAAFLADTIYVMSKRPGRIVARKENPLPR----PRELELTYTDPFNAL 261 V +TH + EA FL + VMS RPGRIVAR E R E T+P A Sbjct: 184 GKQVFFITHSIEEALFLGTEVIVMSPRPGRIVARFETDFVRRFAAGCEARAIKTEPAFA- 242 Query: 262 VHELREHI 269 ELRE I Sbjct: 243 --ELREEI 248 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.139 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 863,335 Number of extensions: 35569 Number of successful extensions: 458 Number of sequences better than 1.0e-08: 120 Number of HSP's gapped: 292 Number of HSP's successfully gapped: 127 Length of query: 275 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 191 Effective length of database: 1,222,130 Effective search space: 233426830 Effective search space used: 233426830 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)