BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0640.p
         (348 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313546|ref|YP_003777638.1| nitrate/sulfonate/bicarbonate A...   574   e-165

>gi|300313546|ref|YP_003777638.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 373

 Score =  574 bits (1480), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 282/349 (80%), Positives = 316/349 (90%), Gaps = 6/349 (1%)

Query: 1   MHANKLFKFTAALLLS-AACSASFAQETKIKFQLDWRFEGPSALFLVAKSKGYFAQEKLD 59
           M + +    +AALLL   + S++FAQ+T+IKFQLDWRFEGP+ALFLVAKSKGYFAQEKLD
Sbjct: 30  MRSFRFLGCSAALLLGLVSASSTFAQDTRIKFQLDWRFEGPAALFLVAKSKGYFAQEKLD 89

Query: 60  VVIDAGSGSGNAVNRVASGTYDMGFADMAALMEFTANNPGSPGKPMAVMMVYNDTPAAIF 119
           V IDAG+GSGNAVNRVASGTYDMGFADMAALMEFTANNP +PGKP+AVMMVYNDTPAA+F
Sbjct: 90  VTIDAGNGSGNAVNRVASGTYDMGFADMAALMEFTANNPDAPGKPVAVMMVYNDTPAAVF 149

Query: 120 SLKKTGIKTPADLAGKKLGSPVFDAGRRGYPIFAKANGLDASKANWISMDPPLRETMLAR 179
           SLKK+GIK PADLAGKKLG+PVFDAGRR YPIFAKANGLDASKA W SMDPPLRETML  
Sbjct: 150 SLKKSGIKKPADLAGKKLGAPVFDAGRRAYPIFAKANGLDASKAQWTSMDPPLRETML-- 207

Query: 180 GPXARGDVDAITGFYFTSLLNLNARGIKDADINVMMYPDYGVKLYGNAIIANESLMKTNP 239
              ARGDVDAITGFYFTSLLNLNARGIKD DINVMMYPDYGV+LYGN IIA+++++K  P
Sbjct: 208 ---ARGDVDAITGFYFTSLLNLNARGIKDEDINVMMYPDYGVRLYGNTIIASDTMVKNKP 264

Query: 240 EALRGFLRAFAKATKDVLADPEAAIKVLKERDGLIDAKLELRRLKLAISSAIATPHAKAE 299
           EA++GFLRAFAKA++DV+A PEAAIKVLKERDGLID KLELRRLKLAI+SAIATPHAK+E
Sbjct: 265 EAIKGFLRAFAKASRDVMAHPEAAIKVLKERDGLIDEKLELRRLKLAIASAIATPHAKSE 324

Query: 300 GYGQVFLPRLTLMASQVSDAYGTKTRVNAEKIWTPAYLPSKELLNVFGK 348
           GYGQV+ PRLTLMASQVSDAYGTKTRVNA+KIW  ++LP+K  L+VF K
Sbjct: 325 GYGQVYGPRLTLMASQVSDAYGTKTRVNADKIWNGSFLPTKAELDVFPK 373


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,035,325
Number of extensions: 43038
Number of successful extensions: 148
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 262
Effective length of database: 1,212,660
Effective search space: 317716920
Effective search space used: 317716920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)