BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0637.p
         (300 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313544|ref|YP_003777636.1| transmembrane protein [Herbaspi...   481   e-137

>gi|300313544|ref|YP_003777636.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 411

 Score =  481 bits (1237), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 229/287 (79%), Positives = 254/287 (88%)

Query: 1   MEAYIFDWLNLLLRWLHVITAIAWIGSSFYFVWLDNSLTRPDDPALLGKGVGGELWAVHG 60
           MEAYI DWLNLLLRWLHVITAIAWIGSSFYFVWLDNSL  P DP L  KGVGGELWAVHG
Sbjct: 1   MEAYILDWLNLLLRWLHVITAIAWIGSSFYFVWLDNSLVAPTDPELKEKGVGGELWAVHG 60

Query: 61  GGFYNPQKYLLAPKTLPQNLHWFFWESYSTWLSGFALFSVLYLFNAGTFLVDKHVLDMTA 120
           GGFYNPQKYLLAPK LP++LHWF+WESYSTWLSGFALFS+LYLFNA  FLVD++V DM+A
Sbjct: 61  GGFYNPQKYLLAPKVLPEHLHWFYWESYSTWLSGFALFSLLYLFNANVFLVDRNVFDMSA 120

Query: 121 TTAVLAALANLIAGWLVYDAICRVFGDKPGGDRVVGVLVTLYVVAAVWVACHVFSGRAAF 180
           + A  AA+A LI  WL+YDAIC   GD+PG DR+V +LV L VV +VW ACH+FSGRAAF
Sbjct: 121 SMAGGAAIAFLIFNWLIYDAICSTIGDRPGADRLVNLLVGLQVVVSVWAACHLFSGRAAF 180

Query: 181 LMTGASLATVMSANVLFWIIPGQRKMVASMRAGQSPDPIHGKRGKQRSVHNTYFTLPVIF 240
           L++GASLAT+MSANVL WIIPGQRKMVASMRAGQ+PDPIHGKRGKQRSVHNTYFTLPV+F
Sbjct: 181 LISGASLATIMSANVLVWIIPGQRKMVASMRAGQAPDPIHGKRGKQRSVHNTYFTLPVLF 240

Query: 241 AMLSNHYSMTYSAGNNWLVLLLIMLAGVLIRQFFVLRHKSVFKWQYP 287
           AMLSNHYSMTY+A +NW+VLL+IM AG LIRQFFVLRHK V+ W YP
Sbjct: 241 AMLSNHYSMTYNAPHNWVVLLVIMAAGALIRQFFVLRHKGVYNWWYP 287


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.140    0.466 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 905,595
Number of extensions: 34949
Number of successful extensions: 107
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 215
Effective length of database: 1,217,395
Effective search space: 261739925
Effective search space used: 261739925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)