BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0630.p (242 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporte... 428 e-121 gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 310 8e-86 gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 275 3e-75 gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPa... 274 6e-75 gi|300313887|ref|YP_003777979.1| amino acid ABC transporter ATPa... 263 7e-72 >gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 428 bits (1101), Expect = e-121, Method: Compositional matrix adjust. Identities = 208/242 (85%), Positives = 224/242 (92%) Query: 1 MPLIAIEDVKKRYGDNEVLKGIRLSVDAGEVIAIIGKSGSGKSTLLRCINGLETIDEGSI 60 MPLIAI++VKKR+GDNEVLKGI L V+ GEVIAIIGKSGSGKSTLLRCINGLE+IDEG+I Sbjct: 1 MPLIAIDNVKKRFGDNEVLKGISLDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGNI 60 Query: 61 SVAGAYLGTSELELKTLRLKVGMIFQQFNLFPHLSVGRNVMISPMIVKGTPEAEARELAK 120 SVAGA LG SELEL+ LRLKVGMIFQQFNLFPHLSVGRNVMI+PMIVKG EAEA + AK Sbjct: 61 SVAGAKLGASELELRNLRLKVGMIFQQFNLFPHLSVGRNVMIAPMIVKGVSEAEAMKTAK 120 Query: 121 KNLERVGLGMKFDAFPDQLSGGQQQRVAIARALSMQPQALLCDEITSALDPELVNEVLAV 180 NLE+VGLG KFDA+PDQLSGGQQQRVAIARALSM PQALLCDEITSALDPELVNEVL V Sbjct: 121 ANLEKVGLGHKFDAYPDQLSGGQQQRVAIARALSMSPQALLCDEITSALDPELVNEVLTV 180 Query: 181 VRSLADDGMTLLMVTHEMRFAREVCDRVVFMHQGKVHEIGPPEELFANPKTPELQQFLGM 240 +R LA +GMTLLMVTHEMRFAREVC+R+VFMHQGKVHEIGPPEELF NPKTPELQQF+GM Sbjct: 181 MRGLAKEGMTLLMVTHEMRFAREVCNRLVFMHQGKVHEIGPPEELFGNPKTPELQQFIGM 240 Query: 241 TH 242 T Sbjct: 241 TQ 242 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 310 bits (793), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 151/239 (63%), Positives = 184/239 (76%) Query: 1 MPLIAIEDVKKRYGDNEVLKGIRLSVDAGEVIAIIGKSGSGKSTLLRCINGLETIDEGSI 60 MP++ I ++ KR+G N+VL GI LSV+ G+V+AIIG+SGSGKST+LRCINGLETID GSI Sbjct: 1 MPIVEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSI 60 Query: 61 SVAGAYLGTSELELKTLRLKVGMIFQQFNLFPHLSVGRNVMISPMIVKGTPEAEARELAK 120 +VAG L L LR VGM+FQ +NLFPHL+V N+M+SP IVK T ARE A Sbjct: 61 TVAGHKLTHKHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARETAI 120 Query: 121 KNLERVGLGMKFDAFPDQLSGGQQQRVAIARALSMQPQALLCDEITSALDPELVNEVLAV 180 K L++VGL K DA+P+QLSGGQQQRVAIAR+L+M+PQ +L DE+TSALDPEL EVL V Sbjct: 121 KVLKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVLKV 180 Query: 181 VRSLADDGMTLLMVTHEMRFAREVCDRVVFMHQGKVHEIGPPEELFANPKTPELQQFLG 239 + LA GMT+L+VTHEM FAR V D VFMHQGKV E P EE FA+P+TPE +QF+G Sbjct: 181 MEELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEARQFIG 239 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 275 bits (702), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 132/237 (55%), Positives = 180/237 (75%), Gaps = 1/237 (0%) Query: 3 LIAIEDVKKRYGDNEVLKGIRLSVDAGEVIAIIGKSGSGKSTLLRCINGLETIDEGSISV 62 ++ I+D+ K +G N+VL G+ L V G+++AIIGKSGSGKSTLLRC+NGLE +D G I V Sbjct: 4 IVKIKDLHKSFGSNKVLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGDIQV 63 Query: 63 AGAYLGT-SELELKTLRLKVGMIFQQFNLFPHLSVGRNVMISPMIVKGTPEAEARELAKK 121 G + +L L+ LR +VG++FQ +NLFPHL+V RN+ ++ +K +A+ +A K Sbjct: 64 CGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEQAKTIAHK 123 Query: 122 NLERVGLGMKFDAFPDQLSGGQQQRVAIARALSMQPQALLCDEITSALDPELVNEVLAVV 181 L+ VGL K DA+P+QLSGGQ QRVAIAR+L+M P+ +L DE+TSALDPEL EVL V+ Sbjct: 124 VLQLVGLENKKDAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVLKVM 183 Query: 182 RSLADDGMTLLMVTHEMRFAREVCDRVVFMHQGKVHEIGPPEELFANPKTPELQQFL 238 LA GMT+++VTHEM FAR++ D +VFMHQG+V EIGPP+ELF++PKT ELQ+F+ Sbjct: 184 EDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSHPKTAELQKFV 240 >gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 274 bits (700), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 137/237 (57%), Positives = 177/237 (74%), Gaps = 1/237 (0%) Query: 3 LIAIEDVKKRYGDNEVLKGIRLSVDAGEVIAIIGKSGSGKSTLLRCINGLETIDEGSISV 62 ++ ++ V KR+G N VL+G+ V GEV+AIIGKSGSGKST LRCIN LE ID G ISV Sbjct: 4 VVELQGVHKRFGSNTVLRGVSFQVARGEVVAIIGKSGSGKSTALRCINRLEQIDAGQISV 63 Query: 63 AGAYLGTSELELKTLRLKVGMIFQQFNLFPHLSVGRNVMISPMIVKGTPEAEARELAKKN 122 G L + L+L+ LR VG++FQ +NLFPHL+V +N+ + P VK P +A+ LA++ Sbjct: 64 CGHALHAAGLDLRGLRRDVGIVFQGYNLFPHLTVLQNITLGPTAVKRMPADQAQTLAQQV 123 Query: 123 LERVGLGMKFDAFPDQLSGGQQQRVAIARALSMQPQALLCDEITSALDPELVNEVLAVVR 182 L RVGL K A+P+QLSGGQQQRVAIAR+L++QPQ +L DE+TSALDPEL EVL V+ Sbjct: 124 LARVGLADKAGAYPEQLSGGQQQRVAIARSLALQPQLMLFDEVTSALDPELTGEVLKVME 183 Query: 183 SLADDGMTLLMVTHEMRFAREVCDRVVFMHQGKVHEIGPPEELFANPKTPELQQFLG 239 +A +GMT+++VTHEM FAR V D+V+FMHQG+V E G PE L A P TPEL+ F+G Sbjct: 184 QMASEGMTMILVTHEMAFARRVADQVIFMHQGQVWEQGGPEILDA-PVTPELRSFVG 239 >gi|300313887|ref|YP_003777979.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 264 Score = 263 bits (673), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 134/237 (56%), Positives = 178/237 (75%), Gaps = 1/237 (0%) Query: 3 LIAIEDVKKRYGDNEVLKGIRLSVDAGEVIAIIGKSGSGKSTLLRCINGLETIDEGSISV 62 ++ ++ V K +GDN+VLKG+ V GE+IAIIG SGSGKST LRCI+ LETID GSI V Sbjct: 26 IVKLDQVYKSFGDNQVLKGVSFEVARGEMIAIIGASGSGKSTALRCIDRLETIDSGSIEV 85 Query: 63 AGAYLGTSELELKTLRLKVGMIFQQFNLFPHLSVGRNVMISPMIVKGTPEAEARELAKKN 122 AG + +++L LR +VG++FQ +NLFPHL+V NVM++ VK +AEAR +A Sbjct: 86 AGIRVDDPQVDLHKLRREVGIVFQSYNLFPHLNVLENVMLALRHVKQQDKAEARRVALAA 145 Query: 123 LERVGLGMKFDAFPDQLSGGQQQRVAIARALSMQPQALLCDEITSALDPELVNEVLAVVR 182 L +VGL K +A+P+QLSGGQQQRVAIAR+L+M P+ +L DE+TSALDP+L EVL V+ Sbjct: 146 LAQVGLDEKANAYPEQLSGGQQQRVAIARSLAMAPKVMLFDEVTSALDPQLTGEVLRVME 205 Query: 183 SLADDGMTLLMVTHEMRFAREVCDRVVFMHQGKVHEIGPPEELFANPKTPELQQFLG 239 LA +GMT+L+VTHEM FA+ V DR+++MHQG+V E+G P E+ +P TPELQ FL Sbjct: 206 DLAANGMTMLLVTHEMNFAKRVADRIIYMHQGRVWEVG-PGEMLDHPYTPELQAFLA 261 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.137 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 744,188 Number of extensions: 29974 Number of successful extensions: 576 Number of sequences better than 1.0e-08: 129 Number of HSP's gapped: 324 Number of HSP's successfully gapped: 144 Length of query: 242 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 159 Effective length of database: 1,226,865 Effective search space: 195071535 Effective search space used: 195071535 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)