BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0628.p (223 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313536|ref|YP_003777628.1| amino acid ABC transporter perm... 384 e-108 gi|300310827|ref|YP_003774919.1| amino acid ABC transporter perm... 202 1e-53 gi|300313889|ref|YP_003777981.1| amino acid ABC transporter perm... 191 3e-50 gi|300313166|ref|YP_003777258.1| amino acid ABC transporter perm... 187 8e-49 gi|300309585|ref|YP_003773677.1| amino acid ABC transporter perm... 182 2e-47 >gi|300313536|ref|YP_003777628.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 223 Score = 384 bits (985), Expect = e-108, Method: Compositional matrix adjust. Identities = 188/223 (84%), Positives = 206/223 (92%) Query: 1 MAYHFDFLAAFDYTDVLVKGVLTTVELIAVGGVVGIAVGIFGAWARTQGPRWLKPIVSGY 60 MAY FDFL+ FDYTDV+VKGV TT+ELIA+GGV+G+AVGIFGAWARTQGP WLKP+VSGY Sbjct: 1 MAYQFDFLSTFDYTDVIVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPVVSGY 60 Query: 61 VELIRNTPFLVQLFFIFFGLPSLGIQISEMQAAILTMVINLGAYSTEIIRAGVNAISRGQ 120 VE+IRNTPFLVQLFFIFFGLPSL I ISE+ AAI+ MVINLGAYSTEIIRAGV AI RGQ Sbjct: 61 VEIIRNTPFLVQLFFIFFGLPSLDIHISEITAAIVAMVINLGAYSTEIIRAGVQAIPRGQ 120 Query: 121 MEAALSLSMSRVQAFRHIILRPALQKIWPALSSQIVIVMLGSAVCSQIAVEELSFAANFI 180 +EAA SLSMSR+Q FRHIILRPALQKIWPALSSQ+VIVMLGSAVCSQIAVEELSFAANFI Sbjct: 121 IEAAQSLSMSRMQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANFI 180 Query: 181 QGRNFRAFEAYLLATAIYLAMAILLRQLLRLIGDKFIFARRAS 223 QGRNFRAFEAY++ATAIYL +AILLRQ+LRLIG FI ARR + Sbjct: 181 QGRNFRAFEAYIVATAIYLVLAILLRQVLRLIGHYFITARRTA 223 >gi|300310827|ref|YP_003774919.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 231 Score = 202 bits (515), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 108/221 (48%), Positives = 150/221 (67%), Gaps = 1/221 (0%) Query: 1 MAYHFDFLAAFDYTDVLVKGVLTTVELIAVGGVVGIAVGIFGAWARTQGPRWLKPIVSGY 60 M Y F F F + D L+ G L T+ L A+ + G+AVGIFGA G + + V+ Y Sbjct: 1 MQYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSKPARLAVTSY 60 Query: 61 VELIRNTPFLVQLFFIFFGLPSLGIQISEMQAAILTMVINLGAYSTEIIRAGVNAISRGQ 120 VELIR+TPFLVQLF IFFGLPS+G+Q+ AA++ M +NLGAYSTEI+RAG+ AI Q Sbjct: 61 VELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQ 120 Query: 121 MEAALSLSMSRVQAFRHIILRPALQKIWPALSSQIVIVMLGSAVCSQIAVEELSFAANFI 180 +EAA +L+M+R Q RH++L PAL+K++PAL+SQ ++ML S++ S I+ EEL+ AN + Sbjct: 121 IEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLL 180 Query: 181 QGRNFRAFEAYLLATAIYLAMAILLRQLLRLIGDKFIFARR 221 FR+FE YL+ +Y+ +A+L R LIG +F RR Sbjct: 181 DAETFRSFEIYLVVMVLYILLALLFRLAFWLIG-LVVFKRR 220 >gi|300313889|ref|YP_003777981.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 277 Score = 191 bits (486), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 93/214 (43%), Positives = 147/214 (68%) Query: 1 MAYHFDFLAAFDYTDVLVKGVLTTVELIAVGGVVGIAVGIFGAWARTQGPRWLKPIVSGY 60 M + DF Y V + G T+++ + +VG+A+GIF A+A+ RWL S Y Sbjct: 1 MNFSLDFSPLAPYWPVFLHGAWLTLKMTTLAVIVGVAIGIFVAFAKNSPHRWLARGCSAY 60 Query: 61 VELIRNTPFLVQLFFIFFGLPSLGIQISEMQAAILTMVINLGAYSTEIIRAGVNAISRGQ 120 +E++RNTPFLVQ+F ++FGL SLGI++ AA+L M+IN+ AY+ EIIRAG++++ RGQ Sbjct: 61 IEVVRNTPFLVQIFLLYFGLASLGIRMPTFAAAVLAMIINIAAYAAEIIRAGLDSVPRGQ 120 Query: 121 MEAALSLSMSRVQAFRHIILRPALQKIWPALSSQIVIVMLGSAVCSQIAVEELSFAANFI 180 +EAA L +S + H++L+PA+++++PAL+SQ +++M SA+ SQI+ EEL+ AN + Sbjct: 121 IEAAQCLGLSVWRIRWHVMLQPAIERVYPALTSQFLLMMQASAMASQISAEELTAIANTV 180 Query: 181 QGRNFRAFEAYLLATAIYLAMAILLRQLLRLIGD 214 Q FR+ E YL+ A+YL +AIL++ + IG+ Sbjct: 181 QSDTFRSLETYLVVAALYLVLAILVKLVAYAIGE 214 >gi|300313166|ref|YP_003777258.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 227 Score = 187 bits (474), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 91/206 (44%), Positives = 139/206 (67%) Query: 1 MAYHFDFLAAFDYTDVLVKGVLTTVELIAVGGVVGIAVGIFGAWARTQGPRWLKPIVSGY 60 M Y FDF++ F D L+ G T++L A+ V+G AVG A A ++ +V Y Sbjct: 1 MNYTFDFMSVFANWDRLLMGAWLTIQLSALSIVLGFAVGTLCAIAGKSRLALVRGLVLAY 60 Query: 61 VELIRNTPFLVQLFFIFFGLPSLGIQISEMQAAILTMVINLGAYSTEIIRAGVNAISRGQ 120 VE+IRNTP LVQ+F +FFGL S+G ++S AA++ + +N+GAY+TEI+RAG+N+I GQ Sbjct: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLSAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ 120 Query: 121 MEAALSLSMSRVQAFRHIILRPALQKIWPALSSQIVIVMLGSAVCSQIAVEELSFAANFI 180 +EAA L MSR + H++L PA+++++P+L+SQ +++ML S++ SQI+ EEL+ AN + Sbjct: 121 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 Query: 181 QGRNFRAFEAYLLATAIYLAMAILLR 206 Q FR+FE Y + YL ++ L R Sbjct: 181 QSETFRSFEVYAVIAVAYLVLSFLFR 206 >gi|300309585|ref|YP_003773677.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 227 Score = 182 bits (462), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 102/221 (46%), Positives = 145/221 (65%), Gaps = 1/221 (0%) Query: 1 MAYHFDFLAAFDYTDVLVKGVLTTVELIAVGGVVGIAVGIFGAWARTQGPRWLKPIVSGY 60 M Y FDF + + +L++G TTV+L + ++G +G A AR WL+ VSGY Sbjct: 1 MHYEFDFASVAAHWPLLLQGAWTTVQLSFLATLLGFVLGAACAVARGSRHGWLRAAVSGY 60 Query: 61 VELIRNTPFLVQLFFIFFGLPSLGIQISEMQAAILTMVINLGAYSTEIIRAGVNAISRGQ 120 VELIRNTP L+Q +F+ FGL S+G+ + M A L +VIN+GAYS EI+RAG+ +I GQ Sbjct: 61 VELIRNTPLLIQCYFLIFGLSSVGVTMPIMAGATLALVINIGAYSCEIVRAGLESIHHGQ 120 Query: 121 MEAALSLSMSRVQAFRHIILRPALQKIWPALSSQIVIVMLGSAVCSQIAVEELSFAANFI 180 +EAA L +S Q F H++L PA++++WPAL+SQ V++ML S++ S + EEL AN + Sbjct: 121 LEAASCLGLSPAQVFWHVVLLPAVERVWPALTSQFVLMMLASSILSSVGAEELLGVANRV 180 Query: 181 QGRNFRAFEAYLLATAIYLAMAILLRQLLRLIGDKFIFARR 221 Q FR FE +LL A YLA+A L+R L+G + +F RR Sbjct: 181 QSDTFRNFEVFLLLWAAYLALACLMRAGFWLLG-QLVFTRR 220 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.331 0.142 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 542,686 Number of extensions: 17448 Number of successful extensions: 107 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 98 Number of HSP's successfully gapped: 19 Length of query: 223 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 141 Effective length of database: 1,231,600 Effective search space: 173655600 Effective search space used: 173655600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 129 (54.3 bits)