BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0614.p
         (181 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310726|ref|YP_003774818.1| signal peptide protein [Herbasp...   221   3e-59

>gi|300310726|ref|YP_003774818.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 154

 Score =  221 bits (563), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 110/153 (71%), Positives = 125/153 (81%), Gaps = 3/153 (1%)

Query: 30  HPIMRRF-RPLVTLLATLATVAAALPGQAQQLQKFPTTTLNAGLYLIKAEVASTEAQREQ 88
           HP+ R F R   TLLA LA  ++A   Q  Q++KFPTT LN G++LIKAEVA TEA+REQ
Sbjct: 4   HPLSRFFVRSAATLLA-LACFSSA-QAQTPQVRKFPTTQLNIGIHLIKAEVAKTEAEREQ 61

Query: 89  GLMFRDKMGANDGMVFAFGAPAGVCMWMKNTLIPLSVAFMDESGKIINIEEMKEQTLDSH 148
           GLMFR+KMG N+GM+F F  PAGVCMWMKNTLIPLSVAFMDE G IINIE+MK QTLDSH
Sbjct: 62  GLMFREKMGDNEGMLFLFEQPAGVCMWMKNTLIPLSVAFMDEKGVIINIEDMKAQTLDSH 121

Query: 149 CAAKPATYALEMNKGWFKQKNIKPGTVIEGLPR 181
           CA + A YALEMNKGWFKQKNI+PG+ IEGLPR
Sbjct: 122 CAKRAAVYALEMNKGWFKQKNIQPGSQIEGLPR 154


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 490,877
Number of extensions: 16185
Number of successful extensions: 43
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 102
Effective length of database: 1,245,805
Effective search space: 127072110
Effective search space used: 127072110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)