BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0603.p (157 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310718|ref|YP_003774810.1| phosphate regulon two-component... 256 8e-70 gi|300310592|ref|YP_003774684.1| phosphate regulon two-component... 189 1e-49 gi|300312680|ref|YP_003776772.1| two component response regulato... 114 3e-27 gi|300310849|ref|YP_003774941.1| two component transcription reg... 110 6e-26 gi|300313896|ref|YP_003777988.1| two component transcription res... 109 1e-25 >gi|300310718|ref|YP_003774810.1| phosphate regulon two-component response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 230 Score = 256 bits (653), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 127/155 (81%), Positives = 135/155 (87%) Query: 2 RARRYXVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRKAPEVGQQSL 61 R VIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRKAPE+G Q+L Sbjct: 76 RTASLPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRKAPEIGSQAL 135 Query: 62 TYGLLGIDTERHRVTVDQQEVELDQAEFKLLRYLVAHPERIFSRAQLLDKVWGDHTFIEE 121 Y + ID ER +V+V + V LDQAEFKLLRYLVAHPERIFSRAQLLDKVWGDHTFIEE Sbjct: 136 KYRDISIDVERRQVSVADKPVLLDQAEFKLLRYLVAHPERIFSRAQLLDKVWGDHTFIEE 195 Query: 122 RTVDVHIMRLRKSLGAAADYVKTVRGMGYKLSMEE 156 RTVDVHIMRLRKSLG A YV+TVRGMGYKLS E+ Sbjct: 196 RTVDVHIMRLRKSLGDLAHYVQTVRGMGYKLSAEQ 230 >gi|300310592|ref|YP_003774684.1| phosphate regulon two-component response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 245 Score = 189 bits (479), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 85/150 (56%), Positives = 117/150 (78%) Query: 4 RRYXVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRKAPEVGQQSLTY 63 ++ VIMLTAK MEEDK+ GL+ GADDY+TKPFSP+EL AR++ALLRRK+PE Q+ ++ Sbjct: 94 QQLSVIMLTAKSMEEDKIAGLDNGADDYITKPFSPRELTARIKALLRRKSPEHAQEVMSA 153 Query: 64 GLLGIDTERHRVTVDQQEVELDQAEFKLLRYLVAHPERIFSRAQLLDKVWGDHTFIEERT 123 G + +D V++ +++ AE+KLL++ +AHP+R+FSR+QLLD+VWGDH IEERT Sbjct: 154 GPITLDPASCSVSLSGARIDIGHAEYKLLKFFLAHPDRVFSRSQLLDRVWGDHVVIEERT 213 Query: 124 VDVHIMRLRKSLGAAADYVKTVRGMGYKLS 153 VDVH++RLRK+L A +KTVR +GY LS Sbjct: 214 VDVHVLRLRKALRDAEYLIKTVRSVGYMLS 243 >gi|300312680|ref|YP_003776772.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 220 Score = 114 bits (286), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 64/160 (40%), Positives = 96/160 (60%), Gaps = 8/160 (5%) Query: 1 MRA--RRYXVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRKAPEVGQ 58 MRA V++LTA+ D+V GL GADDY+ KPF+ ELVAR++AL+RR AP+ Q Sbjct: 64 MRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSAPQPAQ 123 Query: 59 QSLTYGLLGIDTERHRVTVDQQEVELDQAEFKLLRYLVAHPERIFSRAQLLDKV--WGDH 116 LT G L +D R +D +++EL E+ +L YL+ H R+ S+ Q++D V WG+ Sbjct: 124 --LTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPWGED 181 Query: 117 TFIEERTVDVHIMRLRKSLGAAADYVKTVRGMGYKLSMEE 156 I V+V++ R+R + + ++T+RG GY L E Sbjct: 182 FTIN--AVEVYVSRIRLKIADSGVAIRTIRGFGYMLEKSE 219 >gi|300310849|ref|YP_003774941.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 248 Score = 110 bits (275), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 66/156 (42%), Positives = 93/156 (59%), Gaps = 10/156 (6%) Query: 8 VIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRK---APEVGQQ---SL 61 VIMLTA+G D++ GL GADDY+ KPF P+EL AR++++LRR P + Q ++ Sbjct: 81 VIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLRRTQALPPNMAQPDVAAM 140 Query: 62 TYGLLGID-TERHRVTVDQQEVELDQAEFKLLRYLVAHPERIFSRAQLLDKVWGDHTFIE 120 + +D T RH V D V L AEF+LL+ + HP R+ +R QLL+ G + Sbjct: 141 RFAGWTLDLTARHLVNRDGVVVALSGAEFRLLKVFLDHPNRVLNRDQLLELTQGRESDPF 200 Query: 121 ERTVDVHIMRLRKSLGAAA---DYVKTVRGMGYKLS 153 +R+VD+ I RLR+ LG A +KTVR GY L+ Sbjct: 201 DRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLA 236 >gi|300313896|ref|YP_003777988.1| two component transcription response regulator protein [Herbaspirillum seropedicae SmR1] Length = 244 Score = 109 bits (272), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 61/153 (39%), Positives = 93/153 (60%), Gaps = 6/153 (3%) Query: 8 VIMLTAKGMEEDKVKGLNEGADDYVTK-PFSPKELVARVQALLRRKA--PEVGQQSLTYG 64 V+MLTA+ EED+++GL GADDY+ K PFSP+E+VARV+++LRR A + Q+ Sbjct: 89 VLMLTARAEEEDRLRGLELGADDYIGKTPFSPREIVARVKSMLRRNALVQQRTAQAPARS 148 Query: 65 LLGIDTERHRVTVDQQEVELDQAEFKLLRYLVAHPERIFSRAQLLDKVWGDHTFIEERTV 124 LL ID RH+ +V + + L E +LL+ + P ++FSR QLL+ + D + +R V Sbjct: 149 LLHIDDVRHQASVRGEALNLTPLELRLLKTFASAPGQVFSREQLLNHLHDDDRSVTDRAV 208 Query: 125 DVHIMRLRKSLGAA---ADYVKTVRGMGYKLSM 154 D HI LR+ L + ++ V G+GY + Sbjct: 209 DTHIKNLRRKLEPCFPGHNAIQAVYGVGYCFEL 241 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 447,537 Number of extensions: 16741 Number of successful extensions: 139 Number of sequences better than 1.0e-08: 24 Number of HSP's gapped: 114 Number of HSP's successfully gapped: 24 Length of query: 157 Length of database: 1,619,870 Length adjustment: 78 Effective length of query: 79 Effective length of database: 1,250,540 Effective search space: 98792660 Effective search space used: 98792660 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)