BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0602.p
         (445 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310717|ref|YP_003774809.1| phosphoglucosamine mutase [Herb...   729   0.0  
gi|300309813|ref|YP_003773905.1| phosphomannomutase [Herbaspiril...   112   6e-26

>gi|300310717|ref|YP_003774809.1| phosphoglucosamine mutase
           [Herbaspirillum seropedicae SmR1]
          Length = 444

 Score =  729 bits (1881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/443 (82%), Positives = 402/443 (90%)

Query: 1   MAAKYFGTDGVRGRVGTAPITPDFVMRLGYAAGKVLTKTWSSSAKPTVLIGKDTRISGYM 60
           MAAKYFGTDGVRGRVG APITPDFVMRLGYAAGKVL K      +PTVLIGKDTRISGYM
Sbjct: 1   MAAKYFGTDGVRGRVGVAPITPDFVMRLGYAAGKVLAKAKDGMTRPTVLIGKDTRISGYM 60

Query: 61  LEAALEAGFAAAGVDVMLAGPVPTPAVAYLTRALRLSAGVVISASHNPYHDNGIKFFSAS 120
           LEAALEAGFAAAGVDV LAGP+PTPAVAYLTRALRLSAGVVISASHNPYHDNGIKFFSAS
Sbjct: 61  LEAALEAGFAAAGVDVWLAGPLPTPAVAYLTRALRLSAGVVISASHNPYHDNGIKFFSAS 120

Query: 121 GNKLPDAVEAEIEAELEQPMDCVSSEKLGKAKRLDDAQGRYIEFCKSTFPNDLDLHGMRI 180
           GNKLPD+VEA+IEA LEQPMDCV SEKLGKA+RL DA GRYIEFCKSTFPN ++L GMR+
Sbjct: 121 GNKLPDSVEADIEAALEQPMDCVPSEKLGKARRLSDAPGRYIEFCKSTFPNAMNLRGMRL 180

Query: 181 VVDCAHGAAYHIAPHVFHELGAEVITIGNKPDGLNINEGFGATAPEALSRSVLANKAHVG 240
           VVDCAHGAAY+IAPHVFHELGAEVITIGN+PDGLNINE  GATAP+ L  SV   +A +G
Sbjct: 181 VVDCAHGAAYNIAPHVFHELGAEVITIGNQPDGLNINEDCGATAPKTLVASVREYRADLG 240

Query: 241 IALDGDADRLVMVDAAGRIYNGDELLYVMVKDRLATGPVPGAVGTLMTNMALEVAFKKMG 300
           IALDGDADRL+MVD  GRIYNGDELLY+MVKDRLATGPV GAVGTLMTNMALEVAFKKMG
Sbjct: 241 IALDGDADRLIMVDGEGRIYNGDELLYLMVKDRLATGPVHGAVGTLMTNMALEVAFKKMG 300

Query: 301 IGFARAKVGDRYVLETLQERGWLLGGEGSGHLLCLDKHTTGDGIVSALQVLSALKRASLS 360
           + F RAKVGDRYVLE LQE+GW+LGGEGSGHLL LDKHTTGDGIVSALQVLSALKR+  +
Sbjct: 301 VPFERAKVGDRYVLEVLQEKGWVLGGEGSGHLLALDKHTTGDGIVSALQVLSALKRSGKT 360

Query: 361 LADMTADIRLYPQVLINVKIPAGFDWKTNPGMQAEKDAVEQALGDSGRVLIRPSGTEPLI 420
           LA++T+DI +YPQ L+NVKIPAG+DWK+N  +QAEK AVE+ LG+ GRVL+RPSGTEPLI
Sbjct: 361 LAELTSDISMYPQSLVNVKIPAGYDWKSNTALQAEKAAVEEELGERGRVLLRPSGTEPLI 420

Query: 421 RVMVEAQQADVAQTMARRIADKV 443
           RVMVEAQQAD+A++MA+RIA KV
Sbjct: 421 RVMVEAQQADLARSMAQRIAAKV 443


>gi|300309813|ref|YP_003773905.1| phosphomannomutase [Herbaspirillum
           seropedicae SmR1]
          Length = 458

 Score =  112 bits (280), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 118/419 (28%), Positives = 177/419 (42%), Gaps = 32/419 (7%)

Query: 28  LGYAAGKVLTKTWSSSAKPTVLIGKDTRISGYMLEAALEAGFAAAGVDVMLAGPVPTPAV 87
           + Y  G+       +  +  V+IG+D R+SG  L A L  G  A GVDV+  G V TP V
Sbjct: 26  VAYRIGQAFGAAALAKGQKKVVIGRDGRLSGPELAAELARGLQAVGVDVIDLGMVATPMV 85

Query: 88  AYLTRALRLSAGVVISASHNPYHDNGIKFFSASGNKLPDAVEAEIEAELEQPMDCVSSEK 147
            + T  L   +G++++ SHNP   NG K   A      +A+  E    L   +      +
Sbjct: 86  YFGTHVLDTQSGIMVTGSHNPPDYNGFKMVLAG-----EAIHGETIQALYHAIVKGDFPQ 140

Query: 148 LGKAKRLDDAQGRYIEFCKSTFPNDLDL-HGMRIVVDCAHGAAYHIAPHVFHELGAEVIT 206
                   D +  YIE   +    D+ L   ++I VDC +G A   A  ++  LG EV  
Sbjct: 141 GAGGYATHDIKAAYIERMLA----DVKLARPLKIAVDCGNGVAGAFAGEIYRTLGCEVTE 196

Query: 207 IGNKPDGLNINEGFGATAPEALS---RSVLANKAHVGIALDGDADRLVMVDAAGRIYNGD 263
           +  + DG   N       PE L    R +      +G+A DGD DRL +V   G+I   D
Sbjct: 197 LFCEVDGTFPNHHPDPAHPENLQDLIRCLRETDCELGLAFDGDGDRLGLVTKDGQIIYPD 256

Query: 264 ELLYVMVKDRLATGPVPGAVGTLMTNMALEVAFKKMGIGFARAKVGDRYVLETLQERGWL 323
             L +  +D L   P    +  +     L       G      K G   V   L+E G  
Sbjct: 257 RQLMLFAEDVLTRHPGKEILYDVKCTRHLAPWITARGGRPLMWKTGHSLVKAKLRETGAP 316

Query: 324 LGGEGSGHLLCLDK-HTTGDGIVSALQVLSALKRASLSLADMTADIRLYPQVL----INV 378
           LGGE SGH+   D+     DG+ + +++L  + R     AD +A +   PQ +    + +
Sbjct: 317 LGGEMSGHIFFKDRWFGFDDGLYAGVRMLELMARQ----ADPSAVLNALPQSVSTPELQL 372

Query: 379 KIPAGFDWKTNPGMQAE---KDAVEQALGDSGRV-------LIRPSGTEPLIRVMVEAQ 427
           K+  G +      +Q E   + A E    D  RV       L R S T P++ +  EA+
Sbjct: 373 KLQEGENVALIGKLQGEASFEGAQEIIAIDGLRVEYPDGFGLARSSNTTPVVVLRFEAE 431


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,378,210
Number of extensions: 56742
Number of successful extensions: 216
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 2
Length of query: 445
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 357
Effective length of database: 1,203,190
Effective search space: 429538830
Effective search space used: 429538830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)