BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0601.p
         (268 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310716|ref|YP_003774808.1| 7,8-dihydropteroate synthase [H...   417   e-118

>gi|300310716|ref|YP_003774808.1| 7,8-dihydropteroate synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 282

 Score =  417 bits (1071), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 201/255 (78%), Positives = 223/255 (87%)

Query: 1   MGILNVTPDSFSDGGSYSALEFALSHAEQMIADGVDIIDIGGESTRPGIPPVPLDEELRR 60
           MGILNVTPDSFSDGG +  L+ AL+HAEQMIADGVDIIDIGGESTRPGI P+ L+EEL R
Sbjct: 24  MGILNVTPDSFSDGGRHQRLDMALTHAEQMIADGVDIIDIGGESTRPGIAPLSLEEELER 83

Query: 61  VMPVIYALRDCGKPLSIDTYKPEVMREALIAEVDMINDINGFRAPGAIDAVRDSAAGLCI 120
           V+PVIYALRDCGKPLS+DTYKP VMREAL+AEVDMINDINGFRA GAI+AVRDS AGLC+
Sbjct: 84  VLPVIYALRDCGKPLSLDTYKPAVMREALLAEVDMINDINGFRAEGAIEAVRDSEAGLCV 143

Query: 121 MHMQGEPQTMQQQPSYGDVVAEVIAFLQERVGALEAAGVRHERICIDPGFGFGKSVGHNY 180
           MHMQG+PQTMQQ P Y DVV EV AFLQ +V  +  AG+  ERICIDPGFGFGK+V HN 
Sbjct: 144 MHMQGQPQTMQQAPQYHDVVGEVEAFLQRQVDLMRQAGIARERICIDPGFGFGKTVEHNL 203

Query: 181 DLLRNTRSLIDTLDLPLLAGMSRKSMIGAITGKPLDQRLAGSLGAALAAAAQGAMIIRVH 240
            LL+NTR LI  L LPLLAGMSRKSMIGA+TGKPL++R+AGS+GAAL AA QGAMIIRVH
Sbjct: 204 ALLKNTRRLIRQLGLPLLAGMSRKSMIGAVTGKPLERRMAGSIGAALVAAQQGAMIIRVH 263

Query: 241 DVAETVDALNVWQAG 255
           DVAETVDAL +WQAG
Sbjct: 264 DVAETVDALTMWQAG 278


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 798,084
Number of extensions: 30374
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 184
Effective length of database: 1,222,130
Effective search space: 224871920
Effective search space used: 224871920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)