BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0600.p
         (627 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310715|ref|YP_003774807.1| ATP-dependent Zn metallopeptida...  1223   0.0  
gi|300312768|ref|YP_003776860.1| AAA+ class ATPase [Herbaspirill...   102   1e-22

>gi|300310715|ref|YP_003774807.1| ATP-dependent Zn metallopeptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 629

 Score = 1223 bits (3165), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 591/629 (93%), Positives = 614/629 (97%), Gaps = 2/629 (0%)

Query: 1   VNNMFSKAAIWVVIALVLFMVFKQFDSRSAASGATAIAYSDFISEVKAGHIKDATIEDRS 60
           +NNMFSKAAIWVVIALVLFMVFKQFDSRS A+ A AIAYSDFISEVKAGHIKDATIEDR+
Sbjct: 1   MNNMFSKAAIWVVIALVLFMVFKQFDSRSMATNAKAIAYSDFISEVKAGHIKDATIEDRT 60

Query: 61  IIATTQDGKKVKTAATYLDRGLVGDLLNNGVKFDVKQPEEQSFLSQVFISWFPMLLLIGV 120
           I+ATTQDG KVKTAATYLDRGLVGDLLNNGVKFDVKQPEEQSFLSQVFISWFPMLLLIGV
Sbjct: 61  IVATTQDGTKVKTAATYLDRGLVGDLLNNGVKFDVKQPEEQSFLSQVFISWFPMLLLIGV 120

Query: 121 WVFFMRQMQGGGKGGAFSFGKSKARMLDENSNSVTFADVAGCDEAKEEVQELVEFLRDPT 180
           W+FFMRQMQGGGKGGAFSFGKSKARMLDENSNSVTFADVAGCDEAKEEVQELVEFLRDPT
Sbjct: 121 WIFFMRQMQGGGKGGAFSFGKSKARMLDENSNSVTFADVAGCDEAKEEVQELVEFLRDPT 180

Query: 181 KFQKLGGRIPHGVLMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEMFVGVGASRVRD 240
           KFQKLGGRIPHGVLMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEMFVGVGASRVRD
Sbjct: 181 KFQKLGGRIPHGVLMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEMFVGVGASRVRD 240

Query: 241 MFENAKKHAPCIIFIDEIDAVGRHRGAGMGGGNDEREQTLNQMLVEMDGFEANSGVIVIA 300
           MFENAKKHAPCIIFIDEIDAVGRHRGAGMGGGNDEREQTLNQMLVEMDGFEANSGVIVIA
Sbjct: 241 MFENAKKHAPCIIFIDEIDAVGRHRGAGMGGGNDEREQTLNQMLVEMDGFEANSGVIVIA 300

Query: 301 ATNRADVLDKALLRPGRFDRQVMVGLPDIRGREQILYVHMRKVPIAPDVKADILARGTPG 360
           ATNRADVLDKALLRPGRFDRQVMVGLPDIRGREQILYVHMRKVPIAPDVKADILARGTPG
Sbjct: 301 ATNRADVLDKALLRPGRFDRQVMVGLPDIRGREQILYVHMRKVPIAPDVKADILARGTPG 360

Query: 361 FSGADLANLVNEAALFAARRSKRLVEMQDFEDAKDKIVMGPERKSAVMREEERRNTAFHE 420
           FSGADLANLVNEAALFAARR+KRLVEMQDFEDAKDKIVMGPERKSAVMREEERRNTA+HE
Sbjct: 361 FSGADLANLVNEAALFAARRNKRLVEMQDFEDAKDKIVMGPERKSAVMREEERRNTAYHE 420

Query: 421 SGHAVVAKLLPKADPVHKVTIMPRGYALGLTWQLPEHDRVNMYKDKMLEEIAILFGGRIA 480
           SGHAVVAKLLPKADPVHKVTIMPRGYALGLTWQLPEHDRVNMYKDKMLEEI+ILFGGRIA
Sbjct: 421 SGHAVVAKLLPKADPVHKVTIMPRGYALGLTWQLPEHDRVNMYKDKMLEEISILFGGRIA 480

Query: 481 EEIFMHQMSTGASNDFERATKLARAMVTRYGMSEALGTMVYEDTEQDAYFGRMSSKTVSE 540
           EEIFMHQMSTGASNDFERATKLARAMVTRYGMS  LGTMVYED+EQDAYFGRMSSKTVSE
Sbjct: 481 EEIFMHQMSTGASNDFERATKLARAMVTRYGMSVTLGTMVYEDSEQDAYFGRMSSKTVSE 540

Query: 541 ATQQKVDAEIRSILDTQYALSRRLLEENRDKVEVMAQKLLDWETIDADQISDIMAGNEPR 600
           ATQQKVDAEIRSILD QYAL+RRLLEE+RDKV+VMA+ LL+WET+DADQ++DIM G+EPR
Sbjct: 541 ATQQKVDAEIRSILDEQYALARRLLEEHRDKVDVMAKALLEWETLDADQVNDIMNGDEPR 600

Query: 601 PPKSGIPAKK--SSDNTPGDISPTATAPA 627
           PP++G+PAKK  S +N  GD+SP ATAPA
Sbjct: 601 PPRNGVPAKKSPSDNNRSGDVSPNATAPA 629


>gi|300312768|ref|YP_003776860.1| AAA+ class ATPase [Herbaspirillum
           seropedicae SmR1]
          Length = 389

 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/212 (32%), Positives = 111/212 (52%), Gaps = 11/212 (5%)

Query: 169 VQELVEFLRDPTKFQKLGGRIPHGVLMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVE 228
           ++E +  +R     Q      P  +L+ G PGTGKT  AR IAGE K+P  T+     + 
Sbjct: 110 IREFLNTVRYYDALQASEAASPLRLLIYGAPGTGKTQTARWIAGELKLPLLTVRCDTLIS 169

Query: 229 MFVGVGASRVRDMFENAKKHAPCIIFIDEIDAVGRHRGAGMGGGNDEREQTLNQMLVEMD 288
             +G  +  +R +FE  ++  PC++F+DE DA+G  RG     G  E ++ +  +L  +D
Sbjct: 170 SLLGQTSKNLRQVFEYVEQR-PCVLFLDEFDALGSARGNERDVG--ELQRVVISLLQNLD 226

Query: 289 GFEANSGVIVIAATNRADVLDKALLRPGRFDRQVMVGLPDIRGREQILYVHMRKVPIAPD 348
               N+  IV+AA+N   +LD A+ R  RF  +V + LPD + R++ L+  M     +  
Sbjct: 227 ALSENT--IVVAASNHDQLLDSAIWR--RFPFRVPLPLPDFQLRKE-LWKEMLGKFSSSA 281

Query: 349 VKADILARGTPGFSGADLANLV---NEAALFA 377
           +  D+LA  + G SGA +  +V      A+FA
Sbjct: 282 LDFDLLAEKSEGISGALIEQIVLDSKRTAIFA 313


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,783,746
Number of extensions: 71427
Number of successful extensions: 324
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 322
Number of HSP's successfully gapped: 2
Length of query: 627
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 536
Effective length of database: 1,188,985
Effective search space: 637295960
Effective search space used: 637295960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)