BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0593.p
         (189 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310708|ref|YP_003774800.1| cell wall invasion-associated h...   275   2e-75
gi|300312625|ref|YP_003776717.1| transmembrane protein [Herbaspi...   131   4e-32

>gi|300310708|ref|YP_003774800.1| cell wall invasion-associated
           hydrolase [Herbaspirillum seropedicae SmR1]
          Length = 200

 Score =  275 bits (702), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 138/203 (67%), Positives = 158/203 (77%), Gaps = 17/203 (8%)

Query: 1   MTTRNAAKTNRFRRHLAKSCVLAAGFWFCSAAWSIETPLQ-QDTPPP-----------GK 48
           MT R   +++R RR  A++C LAAG W  ++A S +  L  QD PPP            K
Sbjct: 1   MTLR---RSDRIRRQTARACALAAGLWISASAHSADLSLAAQDLPPPQATSPQAQQLISK 57

Query: 49  ANIALAKLHDITNRASELAVQALSMLGINYRYGGTSPETGLDCSGLVRYVFKEALGTDLP 108
            N+A+A+L DITNRASELA QAL+MLGINYRYGG SP+TGLDCSGLVRYVFKEA GTDLP
Sbjct: 58  TNLAIARLQDITNRASELATQALAMLGINYRYGGNSPDTGLDCSGLVRYVFKEAWGTDLP 117

Query: 109 RTSAEISRVGEKV--VDLRPGDLVFYNTLRRGFSHVGIYLGDGKFIHSPSAGGQVRIEDM 166
           RTS EISRVGEK+   +L+PGDLVFYNTLRRGFSHVGIYLGDGKFIHSPSAGGQVRIE M
Sbjct: 118 RTSLEISRVGEKIGKDNLQPGDLVFYNTLRRGFSHVGIYLGDGKFIHSPSAGGQVRIESM 177

Query: 167 DVAYWKKRFNGARRISTTAEDQQ 189
           D +YWKKRFNGARRI+   E+ +
Sbjct: 178 DESYWKKRFNGARRIAAGEEESK 200


>gi|300312625|ref|YP_003776717.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 189

 Score =  131 bits (329), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 60/122 (49%), Positives = 85/122 (69%), Gaps = 2/122 (1%)

Query: 60  TNRASELAVQALSMLGINYRYGGTSPETGLDCSGLVRYVFKEALGTDLPRTSAEISRVGE 119
           T   +E+A+ ALS++   YR+GG +P  GLDCSG+V Y+F +A    +  ++A+I+R G 
Sbjct: 64  TENGNEVALYALSLIDTGYRFGGKNPSAGLDCSGMVSYIFGQAANYRISGSAADIARQGR 123

Query: 120 KV--VDLRPGDLVFYNTLRRGFSHVGIYLGDGKFIHSPSAGGQVRIEDMDVAYWKKRFNG 177
           ++    LR GDLVF+NT+ R FSHVGIYLGDG+F+H+PS  G+V I  MD  Y+ +RF  
Sbjct: 124 QIDPSQLRAGDLVFFNTMNRPFSHVGIYLGDGRFVHAPSTNGKVHITRMDNPYFSRRFEM 183

Query: 178 AR 179
           AR
Sbjct: 184 AR 185


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 619,395
Number of extensions: 25848
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 2
Length of query: 189
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,241,070
Effective search space: 135276630
Effective search space used: 135276630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)