BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0592.p
         (287 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310707|ref|YP_003774799.1| esterase of the alpha-beta hydr...   441   e-125
gi|300311534|ref|YP_003775626.1| lipoprotein transmembrane prote...   135   5e-33

>gi|300310707|ref|YP_003774799.1| esterase of the alpha-beta
           hydrolase superfamily protein [Herbaspirillum
           seropedicae SmR1]
          Length = 316

 Score =  441 bits (1134), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/288 (78%), Positives = 257/288 (89%), Gaps = 10/288 (3%)

Query: 1   MPSKSATPIE-----TSPVTPVAAPTKLPQKPRIALALGGGAARGFAHVGVIKALESQGI 55
           MP  S++P E     +S VTPV+ PT  P++ +I LALGGGAARGFAH+GVIKALE+QG+
Sbjct: 27  MPG-SSSPREGGTATSSTVTPVS-PT--PRRLKIGLALGGGAARGFAHIGVIKALEAQGV 82

Query: 56  VPDIVVGTSAGSLVGALYAAGNSGFALQKLALDMDEATISDWSVPFFAKVSGVLKGEGVQ 115
             D+V GTSAGSLVGALYAAGN GFALQKLAL MDEA ISDWSVP F+KVSGVLKGEGVQ
Sbjct: 83  QVDVVTGTSAGSLVGALYAAGNDGFALQKLALAMDEAAISDWSVPLFSKVSGVLKGEGVQ 142

Query: 116 TYVNRSVNNLPIEKFKIPFGAVATDLKTGQAILFRRGNAGIAVRASSAVPGVFQSVKIGD 175
            YVN+++NN+PIEKFKIPFGAVATDL++GQ ILF+RGNAGIAVRASSAVPGVFQSVKIGD
Sbjct: 143 NYVNKALNNVPIEKFKIPFGAVATDLRSGQPILFQRGNAGIAVRASSAVPGVFQSVKIGD 202

Query: 176 HYYVDGGLVAPVPVHFAREMGADFVIAVNISAQPEAQ-ASASSVDVMLQTFAIMGQSINN 234
           H YVDGGLV+PVPV FAR+MGADFVIAVNISA PEAQ AS+SSVDV+LQTFAIMGQ+IN 
Sbjct: 203 HTYVDGGLVSPVPVRFARQMGADFVIAVNISANPEAQAASSSSVDVLLQTFAIMGQTINQ 262

Query: 235 YELKDADVVIQPGLGAMKGSDFAGRNLAILAGEQAAMKAMPDLKAKLK 282
           YELK+AD+V+QPGLGAMKGSDFA RN+AI+AGEQAA+ AMP++K KLK
Sbjct: 263 YELKNADIVLQPGLGAMKGSDFASRNVAIMAGEQAALAAMPEIKRKLK 310


>gi|300311534|ref|YP_003775626.1| lipoprotein transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 758

 Score =  135 bits (339), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 96/292 (32%), Positives = 146/292 (50%), Gaps = 34/292 (11%)

Query: 20  PTKLPQKPRIALALGGGAARGFAHVGVIKALESQGIVPDIVVGTSAGSLVGALYAAGNSG 79
           P     +PR+ L L GG ARG+AH+GV++ LE   I  D + GTS G+L+G LYA+G   
Sbjct: 35  PAATQPRPRVCLVLSGGGARGYAHLGVLQYLEQLHIPIDCIAGTSMGALIGGLYASGLDA 94

Query: 80  FALQK---------LALDMDEATI-------SDWSVPF----------FAKVSGVLKGEG 113
             L++         +A D +E +         ++  P               SG+++G  
Sbjct: 95  GELERRLAATNLSDIAFDRNERSRLPQAQREDEFQYPISISAGLDGSKLKLASGLVQGNK 154

Query: 114 V----QTYVNRSVNNLPIEKFKIPFGAVATDLKTGQAILFRRGNAGIAVRASSAVPGVFQ 169
           +    Q +  +   N+   +  IPF AVATDL  G  ++   G+   A+RAS AVPG+F 
Sbjct: 155 LLALLQNWTAQLPANIDFARLPIPFRAVATDLSLGSEVVLDHGSLPRAMRASMAVPGLFA 214

Query: 170 SVKIGDHYYVDGGLVAPVPVHFAREMGADFVIAVNISAQPEAQASASSVDVMLQTFA--I 227
             +I     VDGGLV+ +PV  AR+MGAD VIAVNI+   +  A   S   + Q     +
Sbjct: 215 PFRIDQRTLVDGGLVSNLPVQTARDMGADVVIAVNIATPLQDAAQLQSPTAVAQQMVGIL 274

Query: 228 MGQSINNYE--LKDADVVIQPGLGAMKGSDFAGRNLAILAGEQAAMKAMPDL 277
           + Q++   +  L   D++I+P +  M  +DFA     + AG +AA +    L
Sbjct: 275 IQQNVKAQKALLGAQDILIEPQMEGMSFTDFARGKDGVNAGWEAAQRQQARL 326


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 839,308
Number of extensions: 32612
Number of successful extensions: 140
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 2
Length of query: 287
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 203
Effective length of database: 1,222,130
Effective search space: 248092390
Effective search space used: 248092390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)