BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0591.p
         (204 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311331|ref|YP_003775423.1| transcription regulator protein...   220   6e-59
gi|300313616|ref|YP_003777708.1| TetR family transcription regul...    86   2e-18

>gi|300311331|ref|YP_003775423.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 223

 Score =  220 bits (561), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 108/192 (56%), Positives = 145/192 (75%)

Query: 13  GRPREFDIDAALDKAIVVFTEKGYYGASVSDLGTALGLTAGSIYKAFDDKRAVFIAALER 72
           GRPREFD D ALD A+ VF+E+GY GAS+SDL  A+ L  GS+YKAF DK+++F+AALER
Sbjct: 32  GRPREFDADQALDGAVRVFSERGYAGASISDLSEAMQLAQGSLYKAFRDKQSLFLAALER 91

Query: 73  YIALRTERLRQALESARTGRERVRTLLALYAASSYDDDGRRGCLIVSSAVELAISDPEIA 132
           Y   R+E+LR+A+++  TGRER+R +L  YA S+    GR+GCL+VSSAV +   +P +A
Sbjct: 92  YRTQRSEKLRRAIDAGATGRERLRNMLLFYAESAQGAAGRQGCLVVSSAVAITGFEPSVA 151

Query: 133 GRVAQSLDVHEKRLALFIRQGQEDGSVPAHVEAAATARLLLCVMQGMRVIGKTGRSKKEM 192
            ++A +L  +E  L   IRQGQ+DGSV AH +  +TARLLLC+ QGMRV+GK GRS+KEM
Sbjct: 152 TQIASTLARNEALLGELIRQGQQDGSVAAHADPPSTARLLLCLTQGMRVVGKAGRSRKEM 211

Query: 193 NGLIDKAMKVLD 204
             L++ A+KVLD
Sbjct: 212 LALVEVALKVLD 223


>gi|300313616|ref|YP_003777708.1| TetR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 210

 Score = 85.9 bits (211), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 99/201 (49%), Gaps = 6/201 (2%)

Query: 10  RSRGRPREFDIDAALDKAIVVFTEKGYYGASVSDLGTALGLTAGSIYKAFDDKRAVFIAA 69
           R+RGRPR FD D AL +A+ VF  KGY G +++DL  A+G+ A S+Y AF DK A+F   
Sbjct: 3   RTRGRPRSFDRDQALQQAMQVFWSKGYEGTTMADLTEAIGVKAPSLYAAFGDKDALFREV 62

Query: 70  LERYIALRTERLRQALESARTGRERVRTLL----ALYAASSYDD--DGRRGCLIVSSAVE 123
           +E Y    +    + L++ +  RE ++ +L     +Y+  S        +GC++V SA+ 
Sbjct: 63  VEVYARTVSAEPLRLLQAGKGIREDLQAMLRASVRMYSGKSTVPGLPAGKGCMVVISAIN 122

Query: 124 LAISDPEIAGRVAQSLDVHEKRLALFIRQGQEDGSVPAHVEAAATARLLLCVMQGMRVIG 183
            A  + E +  ++Q        +   + Q Q +G + A  +  A        + G+ +  
Sbjct: 123 CAPENSEHSDALSQRRHKRRNEIRARLLQAQREGEIRADADVTALGDFYTSFLNGLALGA 182

Query: 184 KTGRSKKEMNGLIDKAMKVLD 204
           K G S   +   +  AM  L+
Sbjct: 183 KDGVSSARLAATLGPAMLPLE 203


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 599,751
Number of extensions: 22902
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 4
Length of query: 204
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 123
Effective length of database: 1,236,335
Effective search space: 152069205
Effective search space used: 152069205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)