BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0590.p
         (306 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313799|ref|YP_003777891.1| arylesterase [Herbaspirillum se...    66   4e-12
gi|300310935|ref|YP_003775027.1| alpha/beta hydrolase superfamil...    66   4e-12

>gi|300313799|ref|YP_003777891.1| arylesterase [Herbaspirillum
           seropedicae SmR1]
          Length = 275

 Score = 65.9 bits (159), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 63/143 (44%), Gaps = 15/143 (10%)

Query: 21  NGVRLHYVEGGSNGVPIPPMPPILLIPGWPQSWYAWRLVMPLLAASGRRVIAIDPRGMGD 80
           +G  ++Y + GS         P++   GWP     W   M  LA  G RVIA D RG G 
Sbjct: 8   DGTEIYYKDWGSG-------QPVVFGHGWPLDGDMWEYQMNFLAERGYRVIAYDRRGFGR 60

Query: 81  SDKPASGYDLKTIAADLHEFANALGLLKDG--PFDVAGHDIGTWIGHAYAADWPADIRRL 138
           S +P SGYD  T A DL E    L L       F + G D+  +IG          + + 
Sbjct: 61  SSQPWSGYDYDTFADDLAELMEHLDLQGATLVGFSMGGGDVARYIGR----HGSKRVAKA 116

Query: 139 ALFDAALP--GITPPPPPGIPSE 159
           AL  A  P  G  P  P G+P+E
Sbjct: 117 ALLGAVTPIFGQAPDFPQGVPAE 139


>gi|300310935|ref|YP_003775027.1| alpha/beta hydrolase superfamily
           hydrolase/acyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 300

 Score = 65.9 bits (159), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 109/278 (39%), Gaps = 23/278 (8%)

Query: 38  PPMPPILLIPGWPQSWYAWRLVMPLLAASGRRVIAIDPRGMG-----DSDKPASGYDLKT 92
           P  PP++L+ GWP     W   +  L A+G +VI    RG G         P SG  L  
Sbjct: 25  PEAPPVVLLHGWPDDVRTWDAFLRPLRAAGYQVIRPYLRGYGPTRFLSDSTPRSG-QLAA 83

Query: 93  IAADLHEFANALGLLKDGPFDVAGHDIGTWIGHAYAADWPADIRRLALFDAALPGITPPP 152
           +A+DL  F +ALGL +   + + GHD G    +  AA  P  I             TP  
Sbjct: 84  LASDLMAFVDALGLQR---YALIGHDWGARAAYIAAAQTPERISHCITLSVGWGTNTPEQ 140

Query: 153 PPGIPSEETNLKTWHFPFNRLDDLPEILLQGHERAFLNYLFHTKAINRWSITPADLDEYE 212
              +         W F   R        L+   RA   ++++T + + W    ++ +   
Sbjct: 141 QLSLQQSRNYWYHWFFATPR----GAAELEQDRRALARFMWNTWSPS-WKFAESEFNNTA 195

Query: 213 RVFSAPGAVRAALSYYRVAF-------SPAGLAQSRRRGEQTLAMPILALGAEHGVKDAL 265
             F  P  V   L  YR  +       + A L +  R+  + +   ++  GAE G     
Sbjct: 196 ASFDNPDWVAICLHSYRHRWGFAVGDPAYAALEEQLRQTPRIMVPTLVLHGAEDGANHPA 255

Query: 266 VTTLRS--IATDVRGGTLPGSGHYMPEEIPDAVAGELL 301
            +  +    +   R   +PG+GH+   E PD V  E++
Sbjct: 256 TSEGKEKLFSNAYRRVVIPGAGHFPQREKPDEVITEVM 293


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.140    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,039,656
Number of extensions: 43863
Number of successful extensions: 156
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 2
Length of query: 306
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 221
Effective length of database: 1,217,395
Effective search space: 269044295
Effective search space used: 269044295
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)