BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0586.p
         (589 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312734|ref|YP_003776826.1| NADH:flavin oxidoreductase [Her...   105   1e-23
gi|300313850|ref|YP_003777942.1| xenobiotic reductase A [Herbasp...    92   9e-20
gi|300312411|ref|YP_003776503.1| NADH:flavin oxidoreductase/NADH...    86   8e-18

>gi|300312734|ref|YP_003776826.1| NADH:flavin oxidoreductase
           [Herbaspirillum seropedicae SmR1]
          Length = 372

 Score =  105 bits (261), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 115/231 (49%), Gaps = 8/231 (3%)

Query: 20  WHG--GYTDPSASGGLPWAVSSLPGRYSVAPPIPMTTDQIRELIEAYANAAVRVEKSGMQ 77
           W G  G   PSA G  P A S+LP     + P  M+ +QI  L++A+A+AA R   +G +
Sbjct: 114 WDGPAGSVPPSAGGWTPQAPSALPFDDGYSTPQAMSVEQIGALVQAFADAAQRALAAGFK 173

Query: 78  GAEILAGNGYLFSQFFSPILNQRTDEYGGNFENRIRAFLETLGAIRAATSADFVLGIRIG 137
             E+   +GYL  QF SP+ NQR+DEYGG+FENRIR  LE   A RA    +  L +R+ 
Sbjct: 174 VIELHGAHGYLGHQFLSPLSNQRSDEYGGSFENRIRFLLEITRATRAVWPEELPLLVRL- 232

Query: 138 DSSDQRILSAEDANAIALHAQAEGL-IDFVNITHGDYYFHVDRYAGMDQPAGYQLPFSDR 196
            ++D           + L  +   L +D V+++ G          G     GYQ  F+ R
Sbjct: 233 SATDWVDGGWTPEETVTLSQRLRELGVDLVDVSSGGNAPKAVIPVG----PGYQTSFAAR 288

Query: 197 IGEGIRVPRIIVGRYGTLDDAEQAIKTGQADMVNIVRGMIADPMLVVKAKQ 247
           +     +    VG       AE  ++TGQAD+V + R ++ DP   + A Q
Sbjct: 289 VKAEAGIASGAVGMITDAIQAEHILRTGQADLVLLARELLRDPYWPLHAAQ 339


>gi|300313850|ref|YP_003777942.1| xenobiotic reductase A
           [Herbaspirillum seropedicae SmR1]
          Length = 362

 Score = 92.4 bits (228), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 100/206 (48%), Gaps = 11/206 (5%)

Query: 49  PIPMTTDQIRELIEAYANAAVRVEKSGMQGAEILAGNGYLFSQFFSPILNQRTDEYGGNF 108
           P  M+ D I  + + + NAAVR  ++G +  E+   +GYL   FFS   NQR D YGG+ 
Sbjct: 145 PKAMSLDDIARVRQDFVNAAVRAREAGFEWLELHFAHGYLGQSFFSAHANQRDDLYGGSV 204

Query: 109 ENRIRAFLETLGAIRAATSADFVLGIRIG----DSSDQRILSAEDANAIALHAQAEGLID 164
           ENR R  LETL A+R        L +R G    D  D+  L   ++  +    +  G+ D
Sbjct: 205 ENRARFLLETLRAVREVWPEHLALTVRFGVLEYDGRDEETLM--ESIGVVRQFKDSGM-D 261

Query: 165 FVNITHGDYYFHVDRYAGMDQPAGYQLPFSDRIGEGIRVPRIIVGRYGTLDDAEQAIKTG 224
            +++T G   F +        PA +  P + R+ E   VP      +GT   AEQA+K G
Sbjct: 262 MISVTIG---FTIPEVQIPWGPA-FLGPIAKRVREEAAVPVSSAWGFGTPALAEQAVKDG 317

Query: 225 QADMVNIVRGMIADPMLVVKAKQGRG 250
           Q D+V + R  + +P    +A +  G
Sbjct: 318 QLDLVMVGRSHLVNPHWTYQAAKELG 343


>gi|300312411|ref|YP_003776503.1| NADH:flavin oxidoreductase/NADH
           oxidase family protein [Herbaspirillum seropedicae SmR1]
          Length = 366

 Score = 85.9 bits (211), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 116/261 (44%), Gaps = 26/261 (9%)

Query: 3   RMVKAIAPTGMKLFQQLWHGG---YTDPSASGGLPWAVSSL---------PGRYSVAPPI 50
           ++  A+   G ++F QLWH G   + D      LP A S++          G      P 
Sbjct: 89  KITDAVHAKGGRIFLQLWHVGRISHPDLQPGHALPVAPSAVQPEGQAFTESGFKPFVTPR 148

Query: 51  PMTTDQIRELIEAYANAAVRVEKSGMQGAEILAGNGYLFSQFFSPILNQRTDEYGGNFEN 110
            +   ++  ++E Y  AA    ++G  G EI A NGYL  QF     NQRTD YGG+ EN
Sbjct: 149 ALEAAELPAIVEQYKKAAQLSMQAGFDGVEIHAANGYLLDQFLRDKTNQRTDGYGGSIEN 208

Query: 111 RIRAFLETLGAIRAATSADFVLGIRIGDSSDQRILSAEDANAIALHAQAEGLIDFVNITH 170
           R R  LE + A+ +   ++ V GIR+   S    ++  D  A+  +   E L  F  +  
Sbjct: 209 RARLLLEVVQAVTSVVPSERV-GIRLSPISPANDIADSDPKALFSYV-VEQLNRFKLV-- 264

Query: 171 GDYYFHVDRYAG---MDQPAGYQLPFSDRIGEGIRVPRIIVGRYGTLDDAEQAIKTGQAD 227
              Y HV   A     + P G+ L     + +G+     I      LD A QA  + +AD
Sbjct: 265 ---YLHVVEGATGGPREVPGGFDLQVLRDLFKGL----YIANNGYDLDMALQARASNRAD 317

Query: 228 MVNIVRGMIADPMLVVKAKQG 248
           +V   R  IA+P LV +   G
Sbjct: 318 LVAFGRPWIANPDLVQRFLHG 338


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,855,446
Number of extensions: 80242
Number of successful extensions: 267
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 263
Number of HSP's successfully gapped: 3
Length of query: 589
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 498
Effective length of database: 1,188,985
Effective search space: 592114530
Effective search space used: 592114530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)