BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0583.p (230 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC t... 218 4e-58 gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC t... 210 7e-56 gi|300313404|ref|YP_003777496.1| branched-chain amino acid ABC t... 208 2e-55 gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC t... 202 2e-53 gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC t... 202 2e-53 >gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 235 Score = 218 bits (554), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 110/213 (51%), Positives = 152/213 (71%), Gaps = 1/213 (0%) Query: 8 IELGDLCVNYGIVPALRGVNITLRKGQIVTIIGANGAGKSTMMKTMAGLLRPSSGSIRLF 67 ++ + +YG + AL GV++ + KG+IVT+IGANGAGK+T++ T+ G R SSG + Sbjct: 3 LQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIFE 62 Query: 68 GEEVSGLSAEKLVPRGLSLVPEGRRLFGAMSVGENMALGAYCRGNAAAIAQDFERTLSYF 127 G++++ L +++ RGL++ PEGRR+F +++V EN+ +GA+ N A I Q E F Sbjct: 63 GQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEA-IEQGIEYVFGLF 121 Query: 128 PDLKHRLKTVAGTLSGGQQQMVAVARALMSSPRILLLDEPTIGLAPAVVDTISSVIGTIR 187 P LK R AGT+SGG+QQM+A+ RALMS PR+LLLDEPT+GLAP V+ I +I TIR Sbjct: 122 PRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRTIR 181 Query: 188 DSGVDVILVEQNAEIALEVADYGYVLEDGNVVM 220 +SGV V LVEQNA AL VAD GYVLE+G+VVM Sbjct: 182 ESGVTVFLVEQNANKALGVADRGYVLENGHVVM 214 >gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 210 bits (535), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 103/219 (47%), Positives = 153/219 (69%), Gaps = 4/219 (1%) Query: 8 IELGDLCVNYGIVPALRGVNITLRKGQIVTIIGANGAGKSTMMKTMAGLLRPSSGSIRLF 67 + + +L YG V L G+++ + KG++VT+IG+NGAGK+T M+ ++G+++P G + L Sbjct: 2 LTISNLHAAYGKVEVLHGISMEVPKGKVVTLIGSNGAGKTTTMRAISGMIKPKGGEVTLG 61 Query: 68 GEEVSGLSAEKLVPRGLSLVPEGRRLFGAMSVGENMALGAYCRGNAAA----IAQDFERT 123 G+ ++GL + K+ GL+ PEGRR+F MSV +N+ LGA+ R A IA D ER Sbjct: 62 GKNITGLDSHKIARFGLAHSPEGRRVFATMSVTDNLLLGAFPRFTRARPKGDIAHDLERA 121 Query: 124 LSYFPDLKHRLKTVAGTLSGGQQQMVAVARALMSSPRILLLDEPTIGLAPAVVDTISSVI 183 L FP LK R +AGTLSGG+QQM+A+ARA+M +P ++LLDEP++GLAP +VD + +I Sbjct: 122 LELFPRLKERQSQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEVFRII 181 Query: 184 GTIRDSGVDVILVEQNAEIALEVADYGYVLEDGNVVMQG 222 +++ GV ++LVEQ A AL VADYGYVLE+G + + G Sbjct: 182 VRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHG 220 >gi|300313404|ref|YP_003777496.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 208 bits (530), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 120/228 (52%), Positives = 152/228 (66%), Gaps = 11/228 (4%) Query: 3 TEDISIELGDLCVNYGIVPALRGVNITLRKGQIVTIIGANGAGKSTMMKTMAGLLRPS-- 60 T + +E+ L YG V AL ++LR GQIVT+IG NGAGKST++ M G L PS Sbjct: 21 TAPVLLEVSGLSARYGKVAALTDTALSLRAGQIVTVIGPNGAGKSTLLNAMMGAL-PSGA 79 Query: 61 --SGSIRLFGEEVSGLSAEKLVPRGLSLVPEGRRLFGAMSVGENMALGAYCR---GNAAA 115 SG I GE+VS + E+ V RGLSLVPE R LF M+V +N+ LGAY R G + Sbjct: 80 AASGRIAFQGEDVSQMEVEERVARGLSLVPEKRELFTTMTVEDNLLLGAYKRHRNGESGY 139 Query: 116 I-AQDFERTLSYFPDLKHRLKTVAGTLSGGQQQMVAVARALMSSPRILLLDEPTIGLAPA 174 + QDF TL FP LK R K AGTLSGG++QM+AV RALM+ P++L+LDEP++GLAP Sbjct: 140 LDQQDFVYTL--FPRLKERRKQAAGTLSGGERQMLAVGRALMAKPQVLMLDEPSLGLAPL 197 Query: 175 VVDTISSVIGTIRDSGVDVILVEQNAEIALEVADYGYVLEDGNVVMQG 222 + I S+I +R +GV +LVEQNA AL+VADYGYVLE G +V G Sbjct: 198 ITREILSIISQLRSTGVATLLVEQNARAALQVADYGYVLEMGEIVCAG 245 >gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 202 bits (514), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 100/217 (46%), Positives = 150/217 (69%), Gaps = 2/217 (0%) Query: 8 IELGDLCVNYGIVPALRGVNITLRKGQIVTIIGANGAGKSTMMKTMAGLLRPS--SGSIR 65 +++ L V YG + A++G+++ + +G++VT+IGANGAGK+T +K + G L S G I Sbjct: 6 LKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRVEGHIE 65 Query: 66 LFGEEVSGLSAEKLVPRGLSLVPEGRRLFGAMSVGENMALGAYCRGNAAAIAQDFERTLS 125 G+ + G + +LV L++VPEGR +F MS+ EN+ +GAY + IA D ++ + Sbjct: 66 YLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKGQIAADIDKWFA 125 Query: 126 YFPDLKHRLKTVAGTLSGGQQQMVAVARALMSSPRILLLDEPTIGLAPAVVDTISSVIGT 185 FP LK R +AGTLSGG+QQM+A+ARALMS P++LLLDEP++GL+P +V+ I VI Sbjct: 126 VFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIFEVIRN 185 Query: 186 IRDSGVDVILVEQNAEIALEVADYGYVLEDGNVVMQG 222 + G+ ++LVEQNA++ALE A GYV+E G + MQG Sbjct: 186 VSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQG 222 >gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 202 bits (514), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 100/217 (46%), Positives = 150/217 (69%), Gaps = 2/217 (0%) Query: 8 IELGDLCVNYGIVPALRGVNITLRKGQIVTIIGANGAGKSTMMKTMAGLLRPS--SGSIR 65 +++ L V YG + A++G+++ + +G++VT+IGANGAGK+T +K + G L S G I Sbjct: 6 LKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRVEGHIE 65 Query: 66 LFGEEVSGLSAEKLVPRGLSLVPEGRRLFGAMSVGENMALGAYCRGNAAAIAQDFERTLS 125 G+ + G + +LV L++VPEGR +F MS+ EN+ +GAY + IA D ++ + Sbjct: 66 YLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKGQIAADIDKWFA 125 Query: 126 YFPDLKHRLKTVAGTLSGGQQQMVAVARALMSSPRILLLDEPTIGLAPAVVDTISSVIGT 185 FP LK R +AGTLSGG+QQM+A+ARALMS P++LLLDEP++GL+P +V+ I VI Sbjct: 126 VFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIFEVIRN 185 Query: 186 IRDSGVDVILVEQNAEIALEVADYGYVLEDGNVVMQG 222 + G+ ++LVEQNA++ALE A GYV+E G + MQG Sbjct: 186 VSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQG 222 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.137 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 714,063 Number of extensions: 31052 Number of successful extensions: 477 Number of sequences better than 1.0e-08: 128 Number of HSP's gapped: 316 Number of HSP's successfully gapped: 144 Length of query: 230 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 148 Effective length of database: 1,231,600 Effective search space: 182276800 Effective search space used: 182276800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)