BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0580.p (159 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314070|ref|YP_003778162.1| branched-chain amino acid ABC t... 70 9e-14 gi|300310992|ref|YP_003775084.1| branched-chain aminoacid ABC tr... 66 1e-12 gi|300312954|ref|YP_003777046.1| amino acid ABC transporter perm... 66 2e-12 gi|300313299|ref|YP_003777391.1| branched-chain amino acid ABC t... 64 8e-12 gi|300313406|ref|YP_003777498.1| branched-chain amino acid ABC t... 63 1e-11 >gi|300314070|ref|YP_003778162.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 294 Score = 70.1 bits (170), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 47/139 (33%), Positives = 81/139 (58%), Gaps = 5/139 (3%) Query: 18 WIXLAAIVATGALYWILMVTQFGKAMRAVAIDHEAAMLQGI--PFKRIAFQGFAVATLLG 75 W+ +A+++ A ++++ T+ G +RA + + GI P GF VA L Sbjct: 151 WVVVASLIVCFATWFVIEKTRLGAYLRAGTENPKLVEAFGINVPLMVTLTYGFGVA--LA 208 Query: 76 AVAGALLAPISVISPTLGADYLIKGFIAVIIGGLGSVPGAIIGSLFIALVESIGGFYFDP 135 A AG L AP+ +SP +G++ +I F V+IGG+GS+ G+II L + L+E + ++ P Sbjct: 209 AFAGVLAAPVIQVSPLMGSNLIITVFAVVVIGGMGSILGSIITGLVLGLIEGLTRVFY-P 267 Query: 136 SIANLTIFILVMLVLMVRP 154 ++ +FI++ +VLMVRP Sbjct: 268 ELSATVVFIIMAIVLMVRP 286 >gi|300310992|ref|YP_003775084.1| branched-chain aminoacid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 308 Score = 66.2 bits (160), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 67/119 (56%), Gaps = 1/119 (0%) Query: 37 TQFGKAMRAVAIDHEAAMLQGIPFKRIAFQGFAVATLLGAVAGALLA-PISVISPTLGAD 95 ++ G+A RA A D A L GI ++ F + +L AV G L+A I ++P +G Sbjct: 178 SRMGRACRACAEDMGMANLLGIDTNKVISFTFVLGAMLAAVGGVLIALTIGKLNPYIGFI 237 Query: 96 YLIKGFIAVIIGGLGSVPGAIIGSLFIALVESIGGFYFDPSIANLTIFILVMLVLMVRP 154 IK F A ++GG+GS+PGA++G + + L E+ Y ++ F L++L+L+ RP Sbjct: 238 AGIKAFTAAVLGGIGSIPGAMLGGVLLGLAETFAAGYLPSEYKDVVSFGLLVLILLFRP 296 >gi|300312954|ref|YP_003777046.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 304 Score = 65.9 bits (159), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 40/106 (37%), Positives = 64/106 (60%) Query: 24 IVATGALYWILMVTQFGKAMRAVAIDHEAAMLQGIPFKRIAFQGFAVATLLGAVAGALLA 83 +V ALY+++ T+ G +RA A + E GI + + F+ LL A+AG +L Sbjct: 150 VVVAIALYFLINRTRIGMWVRAGANNLEMVTAMGINIRLLFRLVFSFGLLLAALAGIMLG 209 Query: 84 PISVISPTLGADYLIKGFIAVIIGGLGSVPGAIIGSLFIALVESIG 129 P+ + +G D LI F+ V+IGG+GSVPGA IG+L + +V+++G Sbjct: 210 PLVAVQAGMGDDVLILAFVVVVIGGIGSVPGAAIGALIVGVVDTLG 255 >gi|300313299|ref|YP_003777391.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 346 Score = 63.5 bits (153), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 42/117 (35%), Positives = 64/117 (54%), Gaps = 1/117 (0%) Query: 37 TQFGKAMRAVAIDHEAAMLQGIPFKRIAFQGFAVATLLGAVAGALLAPISVISPTLGADY 96 T +GKA+RA A++ A L GI FAVA +GA++G L+ P+S I G Sbjct: 219 TLYGKALRATAVNRLGARLMGISTTLAGKLSFAVAAFIGALSGVLIGPMSTIFYDSGFLI 278 Query: 97 LIKGFIAVIIGGLGSVPGAIIGSLFIALVESIGGFYFDPSIANLTIFILVMLVLMVR 153 +KGF+A IG L S P A G+L + L+ES F+ + +F+ ++ +L+ R Sbjct: 279 GLKGFVAATIGALASFPAAAGGALLVGLLESFSSFWAS-DFKEVIVFLALLPILLWR 334 >gi|300313406|ref|YP_003777498.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 350 Score = 62.8 bits (151), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 76/141 (53%), Gaps = 3/141 (2%) Query: 19 IXLAAIVATGALYWILMVTQFGKAMRAVAIDHEAAMLQGIPFKRIAFQGFAVATLLGAVA 78 I +AA++A +Y T GKA+RA A++ A L G+ + F +A +GA+ Sbjct: 208 ITVAALIAV--IYVFFERTLTGKALRATAVNRLGARLVGVGINQAGKLSFGMAAGIGALC 265 Query: 79 GALLAPISVISPTLGADYLIKGFIAVIIGGLGSVPGAIIGSLFIALVESIGGFYFDPSIA 138 G L+AP ++++ G +KGF+ I GGL S P A +GS+ + L+ES F+ + Sbjct: 266 GILIAPFTIVNYESGFIIALKGFVGAIFGGLASYPIAALGSVSVGLIESFSSFW-ASAYK 324 Query: 139 NLTIFILVMLVLMVRPHXSSR 159 L +F +++ +L+ R S Sbjct: 325 ELIVFTVIIPILLWRSLTSHH 345 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.331 0.145 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 426,516 Number of extensions: 14989 Number of successful extensions: 156 Number of sequences better than 1.0e-08: 18 Number of HSP's gapped: 160 Number of HSP's successfully gapped: 18 Length of query: 159 Length of database: 1,619,870 Length adjustment: 78 Effective length of query: 81 Effective length of database: 1,250,540 Effective search space: 101293740 Effective search space used: 101293740 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 127 (53.5 bits)