BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0570.p
         (285 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313476|ref|YP_003777568.1| 2-polyprenyl-6-methoxyphenol hy...   190   1e-49

>gi|300313476|ref|YP_003777568.1| 2-polyprenyl-6-methoxyphenol
           hydroxylase [Herbaspirillum seropedicae SmR1]
          Length = 410

 Score =  190 bits (482), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 108/195 (55%), Positives = 134/195 (68%), Gaps = 16/195 (8%)

Query: 4   TSSHPSSHAAARKPAGVSSPSADICIVGNGAIGKTAALALAQAGLRVTLLAPAAAASGSA 63
           T +HP+S ++A           DICIVG+GA+GKTAAL LAQAG +VTLL      +   
Sbjct: 3   THAHPNSSSSA-------GAGTDICIVGDGAVGKTAALGLAQAGFKVTLL------APPP 49

Query: 64  AASGAEQASWDVRVYAVNQIARDLLSSIKVWDALDAERVAAVDGMDVTGD---DENHPGH 120
            A+  + ASWDVRVYA+N  A+ LLSS++VWDA++ ER+AAVD M V GD   D+  PG 
Sbjct: 50  KAAPPDTASWDVRVYALNHTAQRLLSSVRVWDAMEGERIAAVDNMTVHGDGVPDKARPGL 109

Query: 121 LVFDAYAAHVDALAWIVEDRNLNAALDAALKFSPNVRVVNGRAVSLRSDPHGVALQLESG 180
           L FDAYAA  DALAWIVEDRNL+ ALDAAL+F+PN+RVV GRA +L        L LESG
Sbjct: 110 LSFDAYAARTDALAWIVEDRNLDQALDAALRFAPNIRVVQGRATALAVLGETATLTLESG 169

Query: 181 DTLDASLLVGAXAAT 195
            +L ASL++GA  A 
Sbjct: 170 QSLSASLVIGADGAN 184


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.130    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 674,992
Number of extensions: 22494
Number of successful extensions: 142
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 201
Effective length of database: 1,222,130
Effective search space: 245648130
Effective search space used: 245648130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)