BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0565.p
         (249 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313472|ref|YP_003777564.1| hypothetical protein Hsero_4186...   206   2e-54

>gi|300313472|ref|YP_003777564.1| hypothetical protein Hsero_4186
           [Herbaspirillum seropedicae SmR1]
          Length = 247

 Score =  206 bits (524), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 121/247 (48%), Positives = 160/247 (64%), Gaps = 30/247 (12%)

Query: 13  PATSLPATNDAAATD-DAAKTEGASGASDIK---------LTPAIAKQQLNAAILQSSLE 62
           P+T LP+ N  + ++ D      AS A   K         LT A AK Q N +I+Q+SLE
Sbjct: 16  PSTKLPSVNAGSTSESDRQSANAASPAVSDKIAEAKKANLLTEAGAKAQFNLSIVQASLE 75

Query: 63  VSLSSQNDPLSLVYKSAIENLNEILKPELGDNAIQNAASQDNSPEATADRILSFIKSAFG 122
           VSL +QNDPLSLVYK+AIEN+N++L+P+LGDNAIQN ASQDN+PEATA RI+SFI + F 
Sbjct: 76  VSLQTQNDPLSLVYKTAIENINDVLRPQLGDNAIQNTASQDNTPEATAGRIVSFITNMFD 135

Query: 123 LFSQNSPTSSSADGTEGTDGADGTDNTKRDGNIDKFMSLIQKGVDQGFDEARGILSSLKV 182
           LF +N+P              D  D++    NID +M LI KGVDQGF EARGIL SL V
Sbjct: 136 LFKKNNP--------------DKDDSS----NIDDYMKLIFKGVDQGFKEARGILESLSV 177

Query: 183 LNGDIASNIDKTYEILKKGIADFVASLK--NPTTDDGSAPADGSSNTTTTTSVSVSVSVT 240
           L GDIA NIDKTY++++K + DF+  +K   P T++G    DG   T   +  +VS+S++
Sbjct: 178 LQGDIADNIDKTYDLVQKSLNDFINKVKGAKPDTEEGQGQNDGQGGTVVASETTVSISIS 237

Query: 241 ASRTTIT 247
            S+T I+
Sbjct: 238 VSQTRIS 244


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.303    0.120    0.312 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 493,326
Number of extensions: 14358
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 166
Effective length of database: 1,226,865
Effective search space: 203659590
Effective search space used: 203659590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 129 (54.3 bits)