BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0561.p
         (383 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313471|ref|YP_003777563.1| deoxyguanosinetriphosphate trip...   645   0.0  

>gi|300313471|ref|YP_003777563.1| deoxyguanosinetriphosphate
           triphosphohydrolase [Herbaspirillum seropedicae SmR1]
          Length = 383

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/383 (81%), Positives = 343/383 (89%), Gaps = 2/383 (0%)

Query: 1   MTQDAPLHLAPYAAHAATSTGRRFSEPAPGSRTEYQRDRDRIIHSTAFRRLEYKTQVFVN 60
           M  +AP HLAPYAAH+A+S GRRFSE  PGSR+E+QRDRDRI+HSTAFRRLEYKTQVFVN
Sbjct: 1   MHTEAPDHLAPYAAHSASSRGRRFSETPPGSRSEFQRDRDRIVHSTAFRRLEYKTQVFVN 60

Query: 61  HEGDLFRTRLTHSIEVAQIARSCARNLRLNEDLVEAISLAHDLGHTPFGHAGQDELNSCM 120
           HEGDLFRTRLTHSIEVAQIARSCARNL+LNEDLVEAISLAHDLGHTPFGHAGQDELN CM
Sbjct: 61  HEGDLFRTRLTHSIEVAQIARSCARNLQLNEDLVEAISLAHDLGHTPFGHAGQDELNHCM 120

Query: 121 KDFGGFEHNLQSLRVVDDLEQHYGAFDGLNLMFETREGILKHCSPANARQLGAIGQRFID 180
           K  GGFEHNLQSLRVVD+LEQHYGAFDGLNL FETREGILKHCS  NARQLG IG RF++
Sbjct: 121 KHHGGFEHNLQSLRVVDELEQHYGAFDGLNLSFETREGILKHCSLHNARQLGEIGLRFLE 180

Query: 181 KKQPSLEAQLANLADEIAYNNHDIDDGLRSGLLTIAQLGEVDFFARHQREAESAYPGITG 240
           KKQPSLEAQLANLADEIAYNNHDIDDGLRSGLLT+  + EVDFFARH RE E AYPGITG
Sbjct: 181 KKQPSLEAQLANLADEIAYNNHDIDDGLRSGLLTMELMSEVDFFARHLREVEQAYPGITG 240

Query: 241 RRAINETVRRMINTLIVDLIQTSQENIAAVAPRSIEDVRNAAPLIAFSEPMQQEAAVLKR 300
           RR I+ETVRRMIN LIVDLIQTS+  IA +APR IEDVRNA  LIAFS+PM  EAAVLK+
Sbjct: 241 RRVIHETVRRMINALIVDLIQTSRSRIAEIAPRDIEDVRNAPQLIAFSDPMAAEAAVLKK 300

Query: 301 FLRQNLYRHYQVNRMTAKARRIIAELFQAFLSQPTLLPPDYVVAGQDEEGMR--RQARQV 358
           FLR+ LYRHYQVNRMTAKARRIIAE+F+AF+ QP LLPPDY V G  ++ +R  +QAR+V
Sbjct: 301 FLREKLYRHYQVNRMTAKARRIIAEMFEAFVGQPNLLPPDYQVHGIVDDALRSDKQARKV 360

Query: 359 SDYIAGMTDRYAMREHRRLFMVE 381
           +DYIAGMTDRYA+REHRRLF++E
Sbjct: 361 ADYIAGMTDRYAIREHRRLFVME 383


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,082,189
Number of extensions: 42928
Number of successful extensions: 135
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 296
Effective length of database: 1,207,925
Effective search space: 357545800
Effective search space used: 357545800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)