BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0551.p
         (242 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313463|ref|YP_003777555.1| PP-loop superfamily ATPase [Her...   419   e-119

>gi|300313463|ref|YP_003777555.1| PP-loop superfamily ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 263

 Score =  419 bits (1078), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 199/239 (83%), Positives = 215/239 (89%), Gaps = 5/239 (2%)

Query: 5   TTPRPSLP-----HRALVLFSGGQDSATCLAWALSRYEKVETIGFDYGQRHAIELTVRPA 59
           ++P PSL        ALVLFSGGQDS TCLAWALSRY++VETIGFDYGQRHAIEL VRPA
Sbjct: 18  SSPSPSLAPTLNTQSALVLFSGGQDSTTCLAWALSRYQRVETIGFDYGQRHAIELAVRPA 77

Query: 60  LLEKMRGFSDEWNNKLGEDHMVDLSLISKISDTALTRDVAISMQENGLPNTFVPGRNLLF 119
           LLE+MR FS +W  +LGEDHM+DLSLI KISDTALTRDV I+MQ+NGLPNTFVPGRNLLF
Sbjct: 78  LLERMRAFSPDWQTRLGEDHMIDLSLIGKISDTALTRDVEIAMQDNGLPNTFVPGRNLLF 137

Query: 120 MTVAATVAYRRGLDVLVGGMCETDFSGYPDCRDDTMKALQVALNLGMATQLKVETPLMWI 179
           MTVAAT+AYRRGL+VLVGGMCETDFSGYPDCRDDTMKALQVALNLGMATQLKVETPLMWI
Sbjct: 138 MTVAATLAYRRGLNVLVGGMCETDFSGYPDCRDDTMKALQVALNLGMATQLKVETPLMWI 197

Query: 180 DKAATWRLSEELGGKALVDLIRADTHTCYLGERGALHDWGYGCGTCPACDLRARGYRQY 238
           DKA TW L+E LGG  LVDLIR DTHTCYLGERGALHDWG+GCG CPAC+LRARGY+QY
Sbjct: 198 DKAGTWALAELLGGAPLVDLIRTDTHTCYLGERGALHDWGHGCGKCPACELRARGYQQY 256


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 807,648
Number of extensions: 32639
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 159
Effective length of database: 1,226,865
Effective search space: 195071535
Effective search space used: 195071535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)