BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0550.p
         (263 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313462|ref|YP_003777554.1| hypothetical protein Hsero_4176...   339   2e-94
gi|300313461|ref|YP_003777553.1| prolin-rich signal peptide prot...   175   3e-45

>gi|300313462|ref|YP_003777554.1| hypothetical protein Hsero_4176
           [Herbaspirillum seropedicae SmR1]
          Length = 253

 Score =  339 bits (869), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 156/222 (70%), Positives = 184/222 (82%)

Query: 41  HPVLKRKVSLPPSADLHYNIEAKQSGLQVTGESTVKWSNANGKYSVNAETRAMLVGKILE 100
           HPV KR  +LPPSA+L+Y+I+AKQSGL V G+  VKW+ +   YSV +ETRAML+GKILE
Sbjct: 30  HPVDKRAYNLPPSAELNYSIQAKQSGLDVKGQGLVKWTQSKTSYSVTSETRAMLLGKILE 89

Query: 101 ATSEGDIDAFGLAPARFVEKRFRREASTTTFNRETHAINFTQSTETYPLKGGEQDRTSII 160
           ATSEG +DA+GLAP RFVEKR RRE STTTFNRE + I FTQS E+YPL+GGEQDRTSI 
Sbjct: 90  ATSEGAVDAYGLAPDRFVEKRLRREPSTTTFNREQNKITFTQSAESYPLQGGEQDRTSIT 149

Query: 161 WQLISVARGAPDKFTNGSEWQFFVAGPRDAEQWSFKVVGREKIKTKQGEVNAVHIFRAPP 220
           WQ +++AR    K   GSEW FFVAG RDAEQW+FKVVGREKI+T QGE  A+H+FRAPP
Sbjct: 150 WQFVAIARANAAKMKPGSEWNFFVAGQRDAEQWTFKVVGREKIRTPQGETEALHLFRAPP 209

Query: 221 PDDKSQKLDIWLAPSSDWYPVRLRFTDPDGDFIEQTLDNVSK 262
           PDD+ QKLDIWLAP  +WYPVRL+FTDPDGD+IEQTLD++ K
Sbjct: 210 PDDQGQKLDIWLAPKMEWYPVRLKFTDPDGDYIEQTLDSLKK 251


>gi|300313461|ref|YP_003777553.1| prolin-rich signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 255

 Score =  175 bits (444), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 87/218 (39%), Positives = 127/218 (58%), Gaps = 3/218 (1%)

Query: 47  KVSLPPSADLHYNIEAKQSGLQVTGESTVKWSNANGKYSVNAETRAMLVGKILEATSEGD 106
           +   PPSA L Y++          G +++ W N+   Y +  E  A+ V   L+ +SEG+
Sbjct: 39  RTDAPPSAVLDYDVTGTIDQKPSYGSASLDWRNSGQHYRLEGEVTAIWV-TWLKFSSEGE 97

Query: 107 IDAFGLAPARFVEKRFRREASTTTFNRETHAINFTQSTETYPLKGGEQDRTSIIWQLISV 166
           +DA+G++P  + EK+  R A+ T FNR   +I+F+ S   YP +GGEQDR S+IWQL ++
Sbjct: 98  LDAWGVSPTLYTEKKKFRSATNTHFNRNGDSISFSASETRYPRRGGEQDRGSLIWQLAAI 157

Query: 167 ARGAPDKFTNGSEWQFFVAGPRDAEQWSFKVVGREKIKTKQGEVNAVHIFRAPPPDDKSQ 226
            RG P +F  G+    FVAG RD E W  +V+G E IK   G +   H+ R P P     
Sbjct: 158 GRGDPAQFQPGAVIDLFVAGVRDGEVWRMQVIGEEAIKLPIGTLQTWHVVRVPKPGAYED 217

Query: 227 KLDIWLAPSSDWYPVRLRFTD--PDGDFIEQTLDNVSK 262
           ++DIWLAP  +WYP RLR+TD  P+GD  E +L  + +
Sbjct: 218 RIDIWLAPQHEWYPARLRYTDPRPNGDVTELSLSELRR 255


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.130    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 782,109
Number of extensions: 30691
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 2
Length of query: 263
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 180
Effective length of database: 1,226,865
Effective search space: 220835700
Effective search space used: 220835700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)