BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0549.p
         (362 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313461|ref|YP_003777553.1| prolin-rich signal peptide prot...   279   3e-76
gi|300313462|ref|YP_003777554.1| hypothetical protein Hsero_4176...   191   7e-50

>gi|300313461|ref|YP_003777553.1| prolin-rich signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 255

 Score =  279 bits (713), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 137/223 (61%), Positives = 168/223 (75%), Gaps = 5/223 (2%)

Query: 140 GTQYHIDPPPSAELEYDVLAFSDNLTWHGTSTLDWKTDGSRYTVDGEVYTRLFAKIAFLN 199
           G QY  D PPSA L+YDV    D    +G+++LDW+  G  Y ++GEV T ++  + +L 
Sbjct: 35  GKQYRTDAPPSAVLDYDVTGTIDQKPSYGSASLDWRNSGQHYRLEGEV-TAIW--VTWLK 91

Query: 200 FTSSGEIGAFGVEPELYTEKKRNRPATNTHFNRERNLVSFSASTTNYPRAGGEQDRASLI 259
           F+S GE+ A+GV P LYTEKK+ R ATNTHFNR  + +SFSAS T YPR GGEQDR SLI
Sbjct: 92  FSSEGELDAWGVSPTLYTEKKKFRSATNTHFNRNGDSISFSASETRYPRRGGEQDRGSLI 151

Query: 260 WQLAAIGRGDSAKFAPGAVIDMFVAGVRDGEVWRMQVVGQEEIRLITGAAQVWHVVRQPR 319
           WQLAAIGRGD A+F PGAVID+FVAGVRDGEVWRMQV+G+E I+L  G  Q WHVVR P+
Sbjct: 152 WQLAAIGRGDPAQFQPGAVIDLFVAGVRDGEVWRMQVIGEEAIKLPIGTLQTWHVVRVPK 211

Query: 320 PGSYEQRLDIWLEPGRQWYPARLRFTE--TNGDYLELSLSKLK 360
           PG+YE R+DIWL P  +WYPARLR+T+   NGD  ELSLS+L+
Sbjct: 212 PGAYEDRIDIWLAPQHEWYPARLRYTDPRPNGDVTELSLSELR 254


>gi|300313462|ref|YP_003777554.1| hypothetical protein Hsero_4176
           [Herbaspirillum seropedicae SmR1]
          Length = 253

 Score =  191 bits (486), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 97/228 (42%), Positives = 132/228 (57%), Gaps = 4/228 (1%)

Query: 133 DNPPAVQGTQYHIDPPPSAELEYDVLAFSDNLTWHGTSTLDWKTDGSRYTVDGEVYTRLF 192
           D P  V    Y++  PPSAEL Y + A    L   G   + W    + Y+V  E    L 
Sbjct: 27  DGPHPVDKRAYNL--PPSAELNYSIQAKQSGLDVKGQGLVKWTQSKTSYSVTSETRAMLL 84

Query: 193 AKIAFLNFTSSGEIGAFGVEPELYTEKKRNRPATNTHFNRERNLVSFSASTTNYPRAGGE 252
            KI  L  TS G + A+G+ P+ + EK+  R  + T FNRE+N ++F+ S  +YP  GGE
Sbjct: 85  GKI--LEATSEGAVDAYGLAPDRFVEKRLRREPSTTTFNREQNKITFTQSAESYPLQGGE 142

Query: 253 QDRASLIWQLAAIGRGDSAKFAPGAVIDMFVAGVRDGEVWRMQVVGQEEIRLITGAAQVW 312
           QDR S+ WQ  AI R ++AK  PG+  + FVAG RD E W  +VVG+E+IR   G  +  
Sbjct: 143 QDRTSITWQFVAIARANAAKMKPGSEWNFFVAGQRDAEQWTFKVVGREKIRTPQGETEAL 202

Query: 313 HVVRQPRPGSYEQRLDIWLEPGRQWYPARLRFTETNGDYLELSLSKLK 360
           H+ R P P    Q+LDIWL P  +WYP RL+FT+ +GDY+E +L  LK
Sbjct: 203 HLFRAPPPDDQGQKLDIWLAPKMEWYPVRLKFTDPDGDYIEQTLDSLK 250


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.131    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,160,571
Number of extensions: 48238
Number of successful extensions: 276
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 275
Number of HSP's successfully gapped: 2
Length of query: 362
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 276
Effective length of database: 1,212,660
Effective search space: 334694160
Effective search space used: 334694160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)