BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0546.p
         (161 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313457|ref|YP_003777549.1| ADP-heptose synthase, bifunctio...   255   1e-69

>gi|300313457|ref|YP_003777549.1| ADP-heptose synthase, bifunctional
           sugar kinase/adenylyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 160

 Score =  255 bits (652), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 120/143 (83%), Positives = 135/143 (94%)

Query: 1   MSDFEKKICSRADLQARVAALPQPVVLTNGVFDILHRGHVTYLAQARAEGASLVVAANTD 60
           M+DFE K+C+R +LQ RVA LP+PVV+TNGVFDILHRGHVTYLAQARA+GA+LVVA NTD
Sbjct: 1   MADFESKLCTRDELQQRVAQLPKPVVMTNGVFDILHRGHVTYLAQARAQGAALVVAVNTD 60

Query: 61  ASVKRLGKGDDRPINTCEDRMAVLAALESVSLVVPFDEDTALEVVQEARPQIYVKGGDYD 120
           ASVKRLGKGDDRPINTC+DRMAVLAALESV+LVVPFDEDTALE VQ+ARP+IYVKGGDYD
Sbjct: 61  ASVKRLGKGDDRPINTCDDRMAVLAALESVALVVPFDEDTALEAVQQARPEIYVKGGDYD 120

Query: 121 MSAIPEGQAVAAYGGKSVAIAFE 143
           M AIPEGQAVAAYGG+ ++IAFE
Sbjct: 121 MHAIPEGQAVAAYGGQVLSIAFE 143


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 490,325
Number of extensions: 18032
Number of successful extensions: 50
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 1
Length of query: 161
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 83
Effective length of database: 1,250,540
Effective search space: 103794820
Effective search space used: 103794820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)