BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0545.p
         (116 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313456|ref|YP_003777548.1| hypothetical protein Hsero_4170...   163   4e-42

>gi|300313456|ref|YP_003777548.1| hypothetical protein Hsero_4170
           [Herbaspirillum seropedicae SmR1]
          Length = 174

 Score =  163 bits (412), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 83/121 (68%), Positives = 97/121 (80%), Gaps = 8/121 (6%)

Query: 1   LSIENKGKAGDKLLSVSSPVAKSSEIHTMSMDGNVMKMREV-GSIDIKPSEKIAMQPGNG 59
           LSIENKG   D+L+ VSSP AKS EIHTM+M+GNVMKMREV G +++KP +KIAMQPGNG
Sbjct: 57  LSIENKGATADRLVGVSSPAAKSGEIHTMAMEGNVMKMREVDGGLEVKPGQKIAMQPGNG 116

Query: 60  YHIMLIGLSQPLKLGDKIPLTLTFEKAGKLEVSIYVEDKTAGKDAKDAKDGM----EHMH 115
           YHIML+GLS+PL+ GDK+P TLTFEKAGK+EV+  VED   GK A   KDGM    EHMH
Sbjct: 117 YHIMLMGLSKPLQAGDKVPATLTFEKAGKVEVTFNVED---GKAAAAGKDGMKDMKEHMH 173

Query: 116 H 116
           H
Sbjct: 174 H 174


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.311    0.130    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 291,735
Number of extensions: 9758
Number of successful extensions: 20
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 116
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 43
Effective length of database: 1,274,215
Effective search space: 54791245
Effective search space used: 54791245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 124 (52.4 bits)