BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0540.p (264 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313452|ref|YP_003777544.1| ABC transporter ATPase [Herbasp... 496 e-142 gi|300311770|ref|YP_003775862.1| branched-chain amino acid ABC t... 97 1e-21 gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 96 3e-21 gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transport... 95 5e-21 gi|300311565|ref|YP_003775657.1| branched-chain amino acid ABC t... 93 2e-20 >gi|300313452|ref|YP_003777544.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 264 Score = 496 bits (1277), Expect = e-142, Method: Compositional matrix adjust. Identities = 246/264 (93%), Positives = 254/264 (96%) Query: 1 MLKAKELKITFNPGTPIENPALRGLNLEIPTGQFVAVIGSNGAGKSTFLNAISGDLLVDT 60 MLKA +LKITFNPGTPIENPALRGL+LEIPTGQFVAVIGSNGAGKSTFLNAISGDLLVDT Sbjct: 1 MLKATDLKITFNPGTPIENPALRGLSLEIPTGQFVAVIGSNGAGKSTFLNAISGDLLVDT 60 Query: 61 GSVEIDGVDVTRKQAWDRAGMVARVFQDPMAGTCEALTIEENMALAMARGKRRGFGFAIK 120 G +EID DVTRKQAWDRAGMVARVFQDPMAGTCEALTIEENMALAMARG+RRGF FAI+ Sbjct: 61 GKIEIDSTDVTRKQAWDRAGMVARVFQDPMAGTCEALTIEENMALAMARGRRRGFNFAIR 120 Query: 121 RNMRELFREKLSILNLGLEKRLTDRIGLLSGGQRQAVSLLMASLQPSRILLLDEHTAALD 180 MRELFREKLSILNLGLE RLTDRIGLLSGGQRQAVSLLMASLQPSRILLLDEHTAALD Sbjct: 121 GKMRELFREKLSILNLGLENRLTDRIGLLSGGQRQAVSLLMASLQPSRILLLDEHTAALD 180 Query: 181 PKTAAFVLELTAKIVTESKLTTMMVTHSMRQALDYGDRTVMLHQGQVVLDVSGEERAGLD 240 PKTAAFVLELTAKIV+ESKLTTMMVTHSMRQALDYGDRTVMLHQG+VVLDVSG ERAGLD Sbjct: 181 PKTAAFVLELTAKIVSESKLTTMMVTHSMRQALDYGDRTVMLHQGRVVLDVSGPERAGLD 240 Query: 241 VPDLLKMFERTRGEVLSDDALLLG 264 VPDLLKMFE+TRGE LSDDALLLG Sbjct: 241 VPDLLKMFEQTRGEKLSDDALLLG 264 >gi|300311770|ref|YP_003775862.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 97.4 bits (241), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 123/235 (52%), Gaps = 16/235 (6%) Query: 1 MLKAKELKITFNPGTPIENPALRGLNLEIPTGQFVAVIGSNGAGKSTFLNAISGDLLVDT 60 +L+ ++L +F +E L+ +P GQ +A+IG NGAGKST N I+G L D Sbjct: 3 LLQVQQLSKSFGGVAALEE-----LSFALPAGQMLALIGPNGAGKSTCFNLINGQLRPDR 57 Query: 61 GSVEIDGVDVT---RKQAWDRAGMVARVFQDPMAGTCEALTIEENMALAMARGKRRGFGF 117 G V +DG +T ++ W R V R FQ ++ ++T+ +++ A+ RR + Sbjct: 58 GEVLLDGQSITGLDARRIWRRG--VGRTFQ--VSAAFSSMTVLQSVQAALLSHHRR--LW 111 Query: 118 AIKRNMRELFREK-LSILN-LGLEKRLTDRIGLLSGGQRQAVSLLMASLQPSRILLLDEH 175 + R LFR++ + +L+ +G+ + +L+ G + V L MA R+LL+DE Sbjct: 112 QLWRPADSLFRQQAMELLDQVGMAAQAQRACAVLAYGDIKRVELAMALSNAPRLLLMDEP 171 Query: 176 TAALDPKTAAFVLELTAKIVTESKLTTMMVTHSMRQALDYGDRTVMLHQGQVVLD 230 TA + + ++ LT ++V E + + HSM + DR ++L +GQ+V D Sbjct: 172 TAGMATQERQALMALTRRLVNERGIAVLFTEHSMDVVFAHADRILVLARGQLVAD 226 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 95.9 bits (237), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 72/213 (33%), Positives = 112/213 (52%), Gaps = 16/213 (7%) Query: 19 NPALRGLNLEIPTGQFVAVIGSNGAGKSTFLNAISGDLLVDTGSVEIDGVDVTRKQAW-- 76 N L G++L + GQ VA+IG +G+GKST L I+G +D GS+ + G +T K Sbjct: 16 NQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSITVAGHKLTHKHEHLI 75 Query: 77 DRAGMVARVFQDPMAGTCEALTIEENMALAMARGKRRGFGFAIKRNMRELFREK-LSIL- 134 + V VFQ LT+EEN+ L+ +K+ E RE + +L Sbjct: 76 ELRKDVGMVFQH--YNLFPHLTVEENIMLSPR---------IVKKTATETARETAIKVLK 124 Query: 135 NLGLEKRLTDRIGLLSGGQRQAVSLLMASLQPSRILLLDEHTAALDPKTAAFVLELTAKI 194 +GL+ + LSGGQ+Q V++ + +++L DE T+ALDP+ A VL++ ++ Sbjct: 125 QVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVLKVMEEL 184 Query: 195 VTESKLTTMMVTHSMRQALDYGDRTVMLHQGQV 227 +T ++VTH M A D TV +HQG+V Sbjct: 185 -ARGGMTMLLVTHEMEFARRVADLTVFMHQGKV 216 >gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 95.1 bits (235), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 72/209 (34%), Positives = 110/209 (52%), Gaps = 12/209 (5%) Query: 21 ALRGLNLEIPTGQFVAVIGSNGAGKSTFLNAISGDLLVDTGSVEIDGVDVTRKQAWDRAG 80 AL ++L P G+ A++G +G GK+T L I+G D+G V +DG D + + +R Sbjct: 17 ALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVLLDGEDASARHVRER-- 74 Query: 81 MVARVFQDPMAGTCEALTIEENMALAMARGKRRGFGFAIKRNMRELFREKLS-ILNLGLE 139 V VFQ + +T+ EN+A + R K R +R + REK+ +L L Sbjct: 75 QVGFVFQH--YALFKHMTVFENIAFGL-RVKPRS-----QRPSEAVIREKVKRLLELVQL 126 Query: 140 KRLTDRIG-LLSGGQRQAVSLLMASLQPSRILLLDEHTAALDPKTAAFVLELTAKIVTES 198 L DR LSGGQRQ ++L A R+LLLDE ALD K + ++ E Sbjct: 127 DWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRLHDEL 186 Query: 199 KLTTMMVTHSMRQALDYGDRTVMLHQGQV 227 +T++ VTH +AL+ D+ V++++GQV Sbjct: 187 HVTSIFVTHDQEEALEVADQVVLMNKGQV 215 >gi|300311565|ref|YP_003775657.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 252 Score = 93.2 bits (230), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 78/233 (33%), Positives = 122/233 (52%), Gaps = 14/233 (6%) Query: 19 NPALRGLNLEIPTGQFVAVIGSNGAGKSTFLNAISGDLLVDTGSVEIDGVDVTRK--QAW 76 +P LRG++LE+ G+ A+IG NGAGKS+ + +SG D G + + GVD+TR+ Q Sbjct: 19 SPILRGVDLELRAGERCALIGPNGAGKSSLFHLVSGRYRADAGRITLHGVDITRQSPQQI 78 Query: 77 DRAGMVARVFQDPMAGTCEALTIEENMALAMARGKRRGFGFAIKRNM---RELFREKLSI 133 +R G+ AR FQ + L+ EN+ A+ G+ +A R M E L++ Sbjct: 79 NRLGL-ARSFQ--ITSLFPRLSAFENVRCALLWTL--GYRYAFWRRMGGSHEASARALTV 133 Query: 134 L-NLGLEKRLTDRIGLLSGGQRQAVSLLMASLQPSRILLLDEHTAALDPKTAAFVLELTA 192 L +GL R G LS +++A+ L + + ++LLDE TA + +A ++ L Sbjct: 134 LQQVGLAARADVAAGELSYAEQRALELAVTIAADASVILLDEPTAGMSRAESAAMVALI- 192 Query: 193 KIVTESKLTTMMVTHSMRQALDYGDRTVMLHQGQVV-LDVSGEERAGLDVPDL 244 + VT K T +MV H M+ D DR ++ G+V+ D + RA DV L Sbjct: 193 REVTMGK-TLLMVEHDMQVVFDLADRIAVMDNGRVIACDTAPRIRANEDVQAL 244 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 785,974 Number of extensions: 31915 Number of successful extensions: 482 Number of sequences better than 1.0e-08: 123 Number of HSP's gapped: 338 Number of HSP's successfully gapped: 129 Length of query: 264 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 181 Effective length of database: 1,226,865 Effective search space: 222062565 Effective search space used: 222062565 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)