BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0538.p
         (247 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313450|ref|YP_003777542.1| amidophosphoribosyltransferase ...   256   1e-69

>gi|300313450|ref|YP_003777542.1| amidophosphoribosyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 299

 Score =  256 bits (655), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 132/232 (56%), Positives = 173/232 (74%), Gaps = 4/232 (1%)

Query: 18  LLPSSCVLCGQTDREALCQSCRTRYFSIRPRRCVQCAIPIPTTAREIRCGDCLRHKPAFD 77
           LLPS+C LCG   RE LC  C  R+++ + RRC+QCA+P+P T +E+RCG CL+ +PAFD
Sbjct: 66  LLPSACALCGAEGREILCAPCHKRFYTRQHRRCIQCAMPMPVTGKELRCGACLKDRPAFD 125

Query: 78  ATVVAGDYAAPADQLVLALKFGATLPLAPLLADMLREALGHY----TERGLPLPTLMTAV 133
           AT+VA DY AP+DQL LALKFG  L LAPLLA ++ +A        ++  LP+P+L+  V
Sbjct: 126 ATIVATDYFAPSDQLALALKFGGDLRLAPLLARLIHDASRRNPVPGSDVALPMPSLLAPV 185

Query: 134 PLGPGRLQERGFNQSLEIARPLAHALDVRLEPQLLVRLRDTQAQATLPNDERKRNMRRAF 193
           PLG  RLQERGFNQ+LEIA+PL+  + + L+PQLL R ++T+AQ+ LP   R RN+R AF
Sbjct: 186 PLGRTRLQERGFNQALEIAKPLSQLMGLPLQPQLLERKKETEAQSALPVGARARNVRSAF 245

Query: 194 VVPTTAMNHVRGAHIGVVDDVITTGETLNEIAETLKRFGARRVTNIVFARTV 245
            +P   M+ VRG H+G+VDDV+TTG TLNE+A  LKR GARRVTN+VFART+
Sbjct: 246 ALPFATMDQVRGLHVGIVDDVMTTGATLNEVAIVLKRHGARRVTNLVFARTL 297


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.139    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 755,323
Number of extensions: 33103
Number of successful extensions: 139
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 164
Effective length of database: 1,226,865
Effective search space: 201205860
Effective search space used: 201205860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)