BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0537.p
         (313 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313449|ref|YP_003777541.1| SAM-dependent methyltransferase...   476   e-135

>gi|300313449|ref|YP_003777541.1| SAM-dependent methyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 329

 Score =  476 bits (1224), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 234/314 (74%), Positives = 264/314 (84%), Gaps = 5/314 (1%)

Query: 1   MSLPPPNASAKLSAPIDLPLVRRLFSTPARVAESDFLRREVSARMLERLLLIKIEPQRVL 60
           MSLPPP+ASAKLSAPIDLPLVRR F+ P RVAESDFLRREVSARM ERL L+KI P+ VL
Sbjct: 16  MSLPPPSASAKLSAPIDLPLVRRRFAHPQRVAESDFLRREVSARMQERLALVKIHPREVL 75

Query: 61  DAGCGEGADIAALQKRFSDAQVVGLDGAFNMVALAREHQLAAQSAVNRL---LNKWLPAA 117
           DAGCGEGAD+  LQKR+ +AQVVGLDGA+ M+A+A EHQ  AQSA+NRL   +NKWL + 
Sbjct: 76  DAGCGEGADLPVLQKRYPEAQVVGLDGAYGMLAVAAEHQRGAQSAMNRLFGSINKWLGSG 135

Query: 118 NPGGGASLACADFAQLPFAPNALDMVWSNLALHWHPQPDRVFAEWRRVLRVEGLLMFSCF 177
               G  LACADFA+LP A NALD+VWSNLALHWHPQPDRVFAEWRRVLRVEGLLMFSCF
Sbjct: 136 PALSGPELACADFARLPLAANALDLVWSNLALHWHPQPDRVFAEWRRVLRVEGLLMFSCF 195

Query: 178 GPDTFKELRTAFEAVDADPHSLPFVDMHDFGDMLVNAGFSTPVMDMEAITVTYDSPQRLL 237
           GPDT +E+R+AFE +D  PH+LPFVDMHDFGDMLVNAGFSTPVMDME ITVTYD+PQRLL
Sbjct: 196 GPDTLREVRSAFERIDLAPHTLPFVDMHDFGDMLVNAGFSTPVMDMETITVTYDTPQRLL 255

Query: 238 ADLRAWGGNPLESRRRGLXVVVERLRGFTLQALDRQRGADGKIPLSFEVIYGHAFRPVPK 297
            D+RAWGGNPLE+RRR +    +  R   L A +  R  DGKIPL+FE+IYGHAFRPVPK
Sbjct: 256 EDVRAWGGNPLETRRRSMMSRDQYQR--LLAAFEAMRKPDGKIPLTFEIIYGHAFRPVPK 313

Query: 298 TTASGEAIIRFDLP 311
           TTA+GE+IIRFD P
Sbjct: 314 TTAAGESIIRFDRP 327


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,026,206
Number of extensions: 42882
Number of successful extensions: 154
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 228
Effective length of database: 1,217,395
Effective search space: 277566060
Effective search space used: 277566060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)