BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0525.p
         (282 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313439|ref|YP_003777531.1| heme O oxygenase (cytochrome aa...   300   1e-82

>gi|300313439|ref|YP_003777531.1| heme O oxygenase (cytochrome
           aa3-controlling) transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 378

 Score =  300 bits (767), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 160/204 (78%), Positives = 172/204 (84%), Gaps = 1/204 (0%)

Query: 1   MLIQLAVMGLLVALIPLTLTW-VSNDADKYRKLVWITLFLTFDLIMFGAFTRLTDSGLGC 59
           MLIQL + GL+VALIPL + W     A+KYRKLVW+TLF TFDLIMFGAFTRLTDSGLGC
Sbjct: 5   MLIQLGLTGLVVALIPLAVVWRAQGAANKYRKLVWVTLFFTFDLIMFGAFTRLTDSGLGC 64

Query: 60  PDWPGCYGHSNPLLAHEHISAAQEAMPTGPVTVAKAWIEMIHRYLAMAVGVLIITLMVIA 119
           PDWPGCY H+NPLLAHEHI+AAQEAMPTGPVT AKAWIEM HRY AMAVG LII LMV A
Sbjct: 65  PDWPGCYSHANPLLAHEHINAAQEAMPTGPVTWAKAWIEMTHRYFAMAVGFLIIVLMVAA 124

Query: 120 WRRWIKSGRTELKFRPWFPTLLFLFVCLQGAFGAWTVTMKLQPVIVTIHLLLGLTLLAML 179
           W RWI+SG+TEL+FRPWFPT L  FVCLQGAFGAWTVTMKLQP+IVT+HLLLGL LLAML
Sbjct: 125 WWRWIRSGKTELQFRPWFPTALLGFVCLQGAFGAWTVTMKLQPIIVTLHLLLGLNLLAML 184

Query: 180 TWLGARQNVHAPVSSPGRPHRRPA 203
           TWL ARQ  H PVS  GR    PA
Sbjct: 185 TWLAARQEPHLPVSPAGRALIVPA 208


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.139    0.455 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 754,957
Number of extensions: 26616
Number of successful extensions: 109
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 198
Effective length of database: 1,222,130
Effective search space: 241981740
Effective search space used: 241981740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)