BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0523.p
         (294 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313438|ref|YP_003777530.1| protoheme IX farnesyltransferas...   533   e-153
gi|300313090|ref|YP_003777182.1| 4-hydroxybenzoate octaprenyltra...    85   8e-18

>gi|300313438|ref|YP_003777530.1| protoheme IX farnesyltransferase
           (heme O synthase) transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 297

 Score =  533 bits (1373), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 253/294 (86%), Positives = 279/294 (94%)

Query: 1   LTAQPNRIAQYWALTKPRVTQLAVFCAVIGMFLATPELPDWRKVVFATIGIWLLAGAAFA 60
           LTAQPNRIAQYWALTKPRVTQLAVFCAVIGMFL+TP+LPDW KV+F T+GIWLLAGAAFA
Sbjct: 4   LTAQPNRIAQYWALTKPRVTQLAVFCAVIGMFLSTPDLPDWHKVIFGTLGIWLLAGAAFA 63

Query: 61  INCLVEREIDSRMARTARRPMARGEITVAQTLVFSGVIGGMGMWVLYSLVNPLTMWLTLA 120
           INCLVEREIDSRMARTARRPMARGEITV QTLVFSGV+GG+GMWVLY+LVNPLTMWLT A
Sbjct: 64  INCLVEREIDSRMARTARRPMARGEITVGQTLVFSGVLGGLGMWVLYNLVNPLTMWLTFA 123

Query: 121 TFVGYAIIYTIILKPSTPQNIVIGGLSGAMPPALGWAAIANDVPMQAWILVLIIFIWTPP 180
           TFVGYAIIYTI+LKP+T QNIVIGGL+GAMPPALGWAA+ANDVPMQAW+LV+IIFIWTPP
Sbjct: 124 TFVGYAIIYTIVLKPATSQNIVIGGLAGAMPPALGWAAMANDVPMQAWVLVMIIFIWTPP 183

Query: 181 HFWALAMYRRDDYAKSGLPMLPITHGMKLTQFHILLYTIALIATTMLPFAVGMSGLIYLG 240
           HFWALAMYRRDDYAKSGLPMLPITHGM +T+ H+L+YTIAL A ++LPFA+GMSGLIYLG
Sbjct: 184 HFWALAMYRRDDYAKSGLPMLPITHGMDVTKLHVLMYTIALFAVSLLPFAIGMSGLIYLG 243

Query: 241 TAIVLGLIFFHYAWQIYRHYTDLIARKAFTFSIIYLSILFAALLVDHYLLFRTF 294
           TA+VLG IFF Y+WQ+YR YTDLIARKAF +SI+YLSILFA LLVDHY LFR+F
Sbjct: 244 TAVVLGAIFFWYSWQMYRRYTDLIARKAFAYSIVYLSILFAVLLVDHYFLFRSF 297


>gi|300313090|ref|YP_003777182.1| 4-hydroxybenzoate
           octaprenyltransferase transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 284

 Score = 84.7 bits (208), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 124/272 (45%), Gaps = 5/272 (1%)

Query: 16  KPRVTQLAVFCAVIGMFLATPELPDWRKVVFATIGIWLLAGAAFAINCLVEREIDSRMAR 75
           KP    L ++  +I ++LA   +PDWR +V   +G  L+  A  AIN   +R  D  + R
Sbjct: 15  KPIGILLLLWPTLIALWLAAGGVPDWRILVIYIVGTVLMRSAGCAINDYADRNFDRHVKR 74

Query: 76  TARRPMARGEITVAQTLVFSGVIGGMGMWVLYSLVNPLTMWLTLATFVGYAIIYTIILKP 135
           T +RP+  G+I   + L+ +GV+  +   ++  L N LT+ L++A  +            
Sbjct: 75  TEQRPLTSGKIKSWEALMVAGVLALVSFLLILPL-NALTLQLSVAAVIIAGTYPYFKRFF 133

Query: 136 STPQNIVIGGLSGAMPPALGWAAIANDVPMQAWILVLIIFIWTPPHFWALAMYRRDDYAK 195
           + PQ  +  G++      +G+A++   VP+ AW+L++    W   +    AM  RDD  K
Sbjct: 134 AIPQAYL--GIAFGFGIPMGFASVTGTVPLAAWVLLVANIFWAVAYDTEYAMVDRDDDLK 191

Query: 196 SGLPMLPITHGMKLTQFHILLYTIALIATTMLPFAVGMSGLIYLGTAIVLGLIFFHYAWQ 255
            G+    IT G       +L Y +AL    M+    G+      G  +  G   +HY   
Sbjct: 192 IGIKTSAITFGRYDVAAVMLCYAVALALIWMVGLQYGLGLWFSAGMLVACGFAVYHY--T 249

Query: 256 IYRHYTDLIARKAFTFSIIYLSILFAALLVDH 287
           + R    +    AF  +    + +FA + +D+
Sbjct: 250 LIRERDRMRCFAAFNNNNWLGAAIFAGVALDY 281


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.332    0.143    0.462 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 957,673
Number of extensions: 39868
Number of successful extensions: 182
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 2
Length of query: 294
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 210
Effective length of database: 1,222,130
Effective search space: 256647300
Effective search space used: 256647300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 130 (54.7 bits)