BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0522.p
         (198 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313437|ref|YP_003777529.1| lipoprotein [Herbaspirillum ser...   312   1e-86

>gi|300313437|ref|YP_003777529.1| lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 196

 Score =  312 bits (799), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 157/199 (78%), Positives = 166/199 (83%), Gaps = 4/199 (2%)

Query: 1   MKRLLSFLPAALLALGMLSLAGCQQSAAE-KFVNTDVTGLEYAKDFALTDHNGKPRTLAD 59
           MKR   FL A LLA     LA C  S  E KF NTDVTGL+YAKDFALTDH GKPRTLAD
Sbjct: 1   MKR---FLSALLLAGCATLLAACGPSKPELKFNNTDVTGLDYAKDFALTDHTGKPRTLAD 57

Query: 60  FKGKAVVMFFGYTQCPDVCPTTMAEMANVMKELGPQADKVQVLFVTVDPARDTPQILSQY 119
           FKGK VVMFFGYTQCPDVCPTTM EM+NVMKELGP ADKVQVLFVTVDP RDT ++LSQY
Sbjct: 58  FKGKVVVMFFGYTQCPDVCPTTMVEMSNVMKELGPDADKVQVLFVTVDPERDTQEVLSQY 117

Query: 120 VPAFDKRFLGLYGDEAATAKVAKEFKVFYQKVPGKTAGSYTMDHTAGSYVFDPQGHIRLF 179
           VPAFDKRFLGL GD+  T KVAKEFKVFYQKVPGK  GSYTMDHTAGSYVFDPQG IRLF
Sbjct: 118 VPAFDKRFLGLRGDQQQTEKVAKEFKVFYQKVPGKQPGSYTMDHTAGSYVFDPQGRIRLF 177

Query: 180 VRHGQGAEPIVHDLKLLLS 198
           V+HGQG + + HD+KLLLS
Sbjct: 178 VKHGQGPQTLAHDIKLLLS 196


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 551,566
Number of extensions: 21489
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 118
Effective length of database: 1,241,070
Effective search space: 146446260
Effective search space used: 146446260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)