BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0520.p
         (183 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313434|ref|YP_003777526.1| cell division protein FtsX [Her...   252   1e-68

>gi|300313434|ref|YP_003777526.1| cell division protein FtsX
           [Herbaspirillum seropedicae SmR1]
          Length = 307

 Score =  252 bits (644), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 147/181 (81%), Positives = 159/181 (87%)

Query: 1   LPDSYVLKMSGFQDAMDATRVDDIAQKLKAMPGVDTVQIDSAWVKRLAALLRILRLVLLF 60
           LPDSYVL++ GFQ+AMDA RVD IAQ+L+   GVDTVQIDS WVKRLAALLRILRLVLLF
Sbjct: 125 LPDSYVLRLPGFQNAMDAGRVDQIAQQLQKQAGVDTVQIDSEWVKRLAALLRILRLVLLF 184

Query: 61  LGITLGAVVVAVVFNTIRLQVMTQYEEIEVSRLLGATNAFIHRPFYYTGALLGVCAGGVA 120
           LGITLGAVVVAVVFNTIRLQVMTQ +EIEVSRL GATN+FI+RPFYYTGALLGVCAG VA
Sbjct: 185 LGITLGAVVVAVVFNTIRLQVMTQRDEIEVSRLFGATNSFIYRPFYYTGALLGVCAGLVA 244

Query: 121 LGLVVLALQPLNLAITDFARLYASEFRLAPPSLSAIGFLLGVSALLGLIGAMLSVKRHLS 180
           LGLVV A QPLN AI DFA LYASEF+LA PS  AIG LL VSALLGL GAMLSV+R ++
Sbjct: 245 LGLVVAAQQPLNAAILDFAHLYASEFQLALPSPMAIGLLLAVSALLGLFGAMLSVRRQMA 304

Query: 181 R 181
           R
Sbjct: 305 R 305


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.142    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 398,537
Number of extensions: 10164
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 103
Effective length of database: 1,241,070
Effective search space: 127830210
Effective search space used: 127830210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 127 (53.5 bits)