BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0515.p (230 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313433|ref|YP_003777525.1| cell division ATPase [Herbaspir... 405 e-114 gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPa... 153 1e-38 gi|300310414|ref|YP_003774506.1| spermidine/putrescine ABC trans... 150 1e-37 gi|300311361|ref|YP_003775453.1| antimicrobial peptide ABC trans... 146 2e-36 gi|300312808|ref|YP_003776900.1| glutamine ABC transporter ATPas... 145 3e-36 >gi|300313433|ref|YP_003777525.1| cell division ATPase [Herbaspirillum seropedicae SmR1] Length = 230 Score = 405 bits (1041), Expect = e-114, Method: Compositional matrix adjust. Identities = 195/229 (85%), Positives = 214/229 (93%) Query: 1 MIEFAKVSKQYSRDVFALRDITLSVQKGELLFLAGPSGAGKSTLLKMIAAMERPSAGTLS 60 MIEF +VSKQY+R+V+ALRDITLSV+KGEL+FLAGPSGAGKSTLLKMIAA+ERP+AG L+ Sbjct: 1 MIEFTRVSKQYAREVYALRDITLSVRKGELIFLAGPSGAGKSTLLKMIAAIERPTAGKLA 60 Query: 61 VNGQSINTIKPSGMPYLRRNLGLIFQQQRLLQDRNILANVMLPLIVTGASRSDAEKRARA 120 VNG I +K SG+PYLRRNLGLIFQQQ+LL DRN+L+NVMLPLIVTG+SR DAE+RARA Sbjct: 61 VNGTDIGGLKASGLPYLRRNLGLIFQQQKLLLDRNLLSNVMLPLIVTGSSRQDAERRARA 120 Query: 121 ALDKVDLLDKATSGPQELSGGEQQRVAIARAIVNRPQIILADEPTANLDRDNANKVLAAL 180 ALDKVDLL KA P ELSGGEQQRVAIARAIVNRPQIILADEPTANLDR NANKVLAAL Sbjct: 121 ALDKVDLLGKAMCEPMELSGGEQQRVAIARAIVNRPQIILADEPTANLDRANANKVLAAL 180 Query: 181 KSFHGVGVTCLISTHDEQYLTGADRIIYLDRGRIVDGWHNGVSNPVEIS 229 KSFHGVGVTCLISTHDEQ+LTGADRIIYLDRGRIVDGWHNGV+NPVE+S Sbjct: 181 KSFHGVGVTCLISTHDEQFLTGADRIIYLDRGRIVDGWHNGVANPVEVS 229 >gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 153 bits (387), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 86/218 (39%), Positives = 136/218 (62%), Gaps = 4/218 (1%) Query: 1 MIEFAKVSKQYSRDVFALRDITLSVQKGELLFLAGPSGAGKSTLLKMIAAMERPSAGTLS 60 MIE ++SK + R L+D++LSV +GE++ L GPSG+GKST+L+ I +E G + Sbjct: 1 MIEVKRISKCFGRHE-VLKDVSLSVAQGEVVCLIGPSGSGKSTVLRCINGLESYERGDIL 59 Query: 61 VNGQSINTIKPSGMPYLRRNLGLIFQQQRLLQDRNILANVML-PLIVTGASRSDAEKRAR 119 ++GQ ++ P + LR +G++FQ+ L R +L NV P+ V G +R+ A A Sbjct: 60 IDGQRVDRDGPD-IHRLRTRVGMVFQRFNLFPHRTVLENVTEGPIYVNGLARAQARSEAM 118 Query: 120 AALDKVDLLDKATSGPQELSGGEQQRVAIARAIVNRPQIILADEPTANLDRDNANKVLAA 179 + LDKV L + + P +LSGG+QQRVAIAR++ +P+ IL DEPT+ LD + +VLA Sbjct: 119 SLLDKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEVLAV 178 Query: 180 LKSFHGVGVTCLISTHDEQYLTG-ADRIIYLDRGRIVD 216 +++ G+T ++ TH+ + ADR+ +L G IV+ Sbjct: 179 MRTLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVE 216 >gi|300310414|ref|YP_003774506.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 376 Score = 150 bits (378), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 81/216 (37%), Positives = 125/216 (57%), Gaps = 7/216 (3%) Query: 1 MIEFAKVSKQYSRDVFALRDITLSVQKGELLFLAGPSGAGKSTLLKMIAAMERPSAGTLS 60 +++F V K Y + ++++ L +++GE L L GPSG+GK+T L M+A E P+ G + Sbjct: 21 LVQFCGVKKTYDGENLIVKNLDLDIRRGEFLTLLGPSGSGKTTCLMMLAGFEFPTGGEIR 80 Query: 61 VNGQSINTIKPSGMPYLRRNLGLIFQQQRLLQDRNILANVMLPLIVTGASRSDAEKRARA 120 ++GQ +N + P +RN+G++FQ L I NV PL V R+ E + + Sbjct: 81 LDGQLLNRVPPH-----KRNIGMVFQNYALFPHMTIAQNVAYPLSVRKMDRATREAKVKQ 135 Query: 121 ALDKVDLLDKATSGPQELSGGEQQRVAIARAIVNRPQIILADEPTANLDRDNANKVLAAL 180 ALD V + P +LSGG+QQRVA+AR +V PQ++L DEP LD+ + L Sbjct: 136 ALDMVQMGKFGDRYPTQLSGGQQQRVALARTLVFDPQLVLMDEPLGALDKQLREHMQLEL 195 Query: 181 KSFHG-VGVTCLISTHDE-QYLTGADRIIYLDRGRI 214 K+ H +GVT + THD+ + LT +DR+ D+G I Sbjct: 196 KALHKRLGVTFVYVTHDQSEALTMSDRVAVFDQGVI 231 >gi|300311361|ref|YP_003775453.1| antimicrobial peptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 657 Score = 146 bits (368), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 81/209 (38%), Positives = 121/209 (57%), Gaps = 1/209 (0%) Query: 18 LRDITLSVQKGELLFLAGPSGAGKSTLLKMIAAMERPSAGTLSVNGQSINTIKPSGMPYL 77 L D+ L + GEL+ + G SG+GKSTL+ ++ +++PSAG+ V G+ + + L Sbjct: 25 LNDVNLDIHAGELVAIVGASGSGKSTLMNILGCLDKPSAGSYLVAGRETGKLDADELAQL 84 Query: 78 RR-NLGLIFQQQRLLQDRNILANVMLPLIVTGASRSDAEKRARAALDKVDLLDKATSGPQ 136 RR + G IFQ+ LL D + ANV +P + G +RA L ++ L +++ P Sbjct: 85 RREHFGFIFQRYHLLSDLDATANVEVPSVYAGLEPLQRRQRAGELLARLGLAERSHHKPG 144 Query: 137 ELSGGEQQRVAIARAIVNRPQIILADEPTANLDRDNANKVLAALKSFHGVGVTCLISTHD 196 +LSGG+QQRV+IARA++N +ILADEPT LD + +V+ LK H G T +I THD Sbjct: 145 QLSGGQQQRVSIARALMNGGDVILADEPTGALDSHSGQEVIKILKELHAEGHTIIIVTHD 204 Query: 197 EQYLTGADRIIYLDRGRIVDGWHNGVSNP 225 Q + A RII + G I+ N + P Sbjct: 205 MQVASHAQRIIEIKDGVIIADRRNEETVP 233 >gi|300312808|ref|YP_003776900.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 240 Score = 145 bits (366), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 93/231 (40%), Positives = 137/231 (59%), Gaps = 11/231 (4%) Query: 1 MIEFAKVSKQYSRDVFALRDITLSVQKGELLFLAGPSGAGKSTLLKMIAAMERPSAGTLS 60 M+EF VSK++ +V L I L+++KGE++ L GPSG+GKSTLL+ I A+E G L Sbjct: 1 MVEFKSVSKRFGSNV-VLDGINLTIRKGEVVVLIGPSGSGKSTLLRCINALEEIDGGDLL 59 Query: 61 VNGQSINTIKPSGMPYLRRNLGLIFQQQRLLQDRNILANVML-PLIVTGASRSDAEKRAR 119 V+G S+ + S + +R+ G++FQQ L L NV P V GAS +A A Sbjct: 60 VDGISVLS-GSSSVRAIRQEAGMVFQQFNLFPQLTALENVAFGPRHVRGASSEEANALAS 118 Query: 120 AALDKVDLLDKATSGPQELSGGEQQRVAIARAIVNRPQIILADEPTANLDRDNANKVLAA 179 L KV L ++ P ELSGG+QQRVAIARA+ RP+++L DEPT+ LD + +VL Sbjct: 119 ELLAKVGLAERKHHYPNELSGGQQQRVAIARALAVRPKLMLFDEPTSALDPELRQEVLRV 178 Query: 180 LKSFHGVGVTCLISTHDEQYLTG-ADRIIYLDRGRI-VDGWHNGVSNPVEI 228 ++S G+T ++ TH+ + R+I+++ G I +DG NP E+ Sbjct: 179 MQSLAEEGMTMIVVTHEISFARRVGTRLIFMENGHIAIDG------NPGEL 223 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.134 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 683,617 Number of extensions: 27840 Number of successful extensions: 480 Number of sequences better than 1.0e-08: 131 Number of HSP's gapped: 299 Number of HSP's successfully gapped: 150 Length of query: 230 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 148 Effective length of database: 1,231,600 Effective search space: 182276800 Effective search space used: 182276800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)