BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0510.p
         (307 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313429|ref|YP_003777521.1| zinc protease-like signal pepti...   424   e-120
gi|300312757|ref|YP_003776849.1| Zn-dependent peptidase [Herbasp...    75   8e-15

>gi|300313429|ref|YP_003777521.1| zinc protease-like signal peptide
           protein [Herbaspirillum seropedicae SmR1]
          Length = 438

 Score =  424 bits (1089), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 206/306 (67%), Positives = 246/306 (80%)

Query: 1   LLARTLAQPSFPEALFARDKARTIADVRESQTKAEDIAAKAFWAALYGTHPYARQESEDS 60
           LLAR LA PSFP+A   RD+A  IA+++E  TK E IA KAF  A YG+HPYA   SE S
Sbjct: 131 LLARMLAHPSFPQASLERDRALAIANIKEELTKPEVIAEKAFMHAAYGSHPYAMDASEAS 190

Query: 61  VAAITRDDLVAFHRTHYVANRAVVAMIGDVTRAQADQIAQRLTQQLPQGLALPALPEVAL 120
           + AITR+DL AFHR HYVANRAV+A+IGD+   QA  IA  LT++LPQG ALPALP V  
Sbjct: 191 MQAITREDLQAFHRAHYVANRAVIALIGDINLEQARAIASALTRELPQGAALPALPPVVA 250

Query: 121 TAPKDQRISHPASQSHILIGMPALVRGDPDFFALTVGNYILGGGGFVSRLTNEVREKRAL 180
               ++RI+HPASQSHILIG PA+ RGDPDFFALTVGNY+LGGGGFVSRLT+EVREKR L
Sbjct: 251 PKGSEERIAHPASQSHILIGAPAIQRGDPDFFALTVGNYVLGGGGFVSRLTDEVREKRGL 310

Query: 181 TYSVYSYFSPLAQKGPFQIGLQTKQEQTAEALGVVRRTLADYLRDGPTAAELKAAKDNLV 240
           +YSVYS FSPLAQ GPFQIGLQTK+EQTAEAL V R TL  ++++GPTAAELKAAKDNL 
Sbjct: 311 SYSVYSGFSPLAQPGPFQIGLQTKKEQTAEALRVTRVTLDKFMQEGPTAAELKAAKDNLA 370

Query: 241 GGFALRIDNNRKILDNLAVIGYYGLPLDYLDTWTANIGKVTVAQIRAAFKRKIALDQLST 300
           GGFALRID+N K+L+NL+VIG+YGLPLDYLD W   I  V+V  +RAAF++ +  ++LST
Sbjct: 371 GGFALRIDSNAKLLENLSVIGFYGLPLDYLDHWIERIRAVSVQDVRAAFRKHVHPEELST 430

Query: 301 VVVGEA 306
           ++VGE+
Sbjct: 431 IIVGES 436


>gi|300312757|ref|YP_003776849.1| Zn-dependent peptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 929

 Score = 74.7 bits (182), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 137/321 (42%), Gaps = 27/321 (8%)

Query: 1   LLARTLAQPSFPEALFARDKARTIADVRESQTKAEDIAAKAFWAALYGTHP----YARQE 56
           L+      P    A F + K  T+A + E+  K  D  A    +  +  +P     A Q 
Sbjct: 607 LVGEVFRHPRMDAAEFEQLKNETVAGL-EAGRKDPDTRAGEALSVHFDHYPAGDWRAAQT 665

Query: 57  SEDSVAAI---TRDDLVAFHRTHYVANRAVVAMIGDVTRAQA----DQIAQRLTQQLPQG 109
            E  +AA+   T + +  FHR  Y A++  +A++GD   AQA    DQ     T   P  
Sbjct: 666 LEQRIAAVRAVTLEQVKDFHRRFYGASQGELAVVGDFDPAQARSAIDQAFGGWTSAAPYA 725

Query: 110 LALPALPEVALTAPKDQRISHPASQSHILIGMPA--LVRGDPDFFALTVGNYILGGGGFV 167
             L    ++     K   +  P  ++ +        L   DPD+ AL V N++LGG    
Sbjct: 726 RVLQTWADIP---AKRLLVDTPDKENGVYFARQNIRLSDTDPDYPALAVANFLLGGSSLK 782

Query: 168 SRLTNEVREKRALTYSVYS--YFSPLAQKGPFQIGLQTKQEQTAEALGVVRRTLADYLRD 225
           SRL + VR++  L+Y +YS    + L   G   I      +   +    VR  +A  L+D
Sbjct: 783 SRLADRVRQQDGLSYGIYSGLQVAALTDAGHLTIYAIAAPQNLDKVDAAVREEIALALKD 842

Query: 226 GPTAAELKAAKDNLVGGFALRIDNNRKILDNLAVIGYYGLPLDYLDTWTANIGK----VT 281
           G +  EL+ AK     G   + +  R   DN+A      +  D    W   I +    +T
Sbjct: 843 GFSEEELQRAK----SGILQQRNQQRAGNDNVAATWTLLMNQDRNFLWQQEIDRKLASLT 898

Query: 282 VAQIRAAFKRKIALDQLSTVV 302
           +AQ+ AA ++ +   +++TV+
Sbjct: 899 LAQVNAALRKYVDPARMTTVI 919


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 876,332
Number of extensions: 34668
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 3
Length of query: 307
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 222
Effective length of database: 1,217,395
Effective search space: 270261690
Effective search space used: 270261690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)