BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0502.p
         (304 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313425|ref|YP_003777517.1| drug/metabolite transporter (DM...   362   e-101

>gi|300313425|ref|YP_003777517.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 295

 Score =  362 bits (930), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/287 (62%), Positives = 229/287 (79%)

Query: 12  MQHIPPRAVGALLVNTTIWGLSWIAFKSLQQQGIHPLWATAIIFSCCTIWMLLLKRKSLR 71
           MQ +P  AV ALLVNTTIWGLSW A ++L+  G+HP+W TA IF  CT+ ++ L+ + L 
Sbjct: 1   MQVLPKSAVAALLVNTTIWGLSWTATRALEGMGLHPVWTTAAIFGLCTLLLVALRYRDLP 60

Query: 72  EIGKHPELVYVAIASGLTNTAFNGAVAFGDVVRVVLLFYLMPIWAVILARLVLHEPITQR 131
           ++ +HP L++V +A+GLTN+ FN AVA+GDVVRV+LLFYLMP+W VILARLVLHE IT R
Sbjct: 61  QLWRHPALLWVGLATGLTNSTFNVAVAYGDVVRVILLFYLMPVWTVILARLVLHEAITPR 120

Query: 132 ALLRIALGLTGAVIVLYQPAIGVSLPHDLADWVALAGGFFFAVNNIMLRRLHGVADGARA 191
           +L R+ALGL+GA IVLYQP +G+ LP  L DW+A+A G  FA+ N++LRRL G++D ARA
Sbjct: 121 SLTRVALGLSGAFIVLYQPRLGLPLPQSLPDWMAVAAGLLFAITNVLLRRLQGLSDSARA 180

Query: 192 VAMLSGGALLSIILGAALAASGLIAWPGAIGALSVPTLALWSVLFMVSNLCLQYGVARLP 251
           VAML+G  LL+ +LG  LA +G IAWP  + A + P + +W++LF+VSNLCLQYGVARLP
Sbjct: 181 VAMLAGSGLLAGVLGVMLALAGAIAWPLHVPATAWPLVGVWALLFLVSNLCLQYGVARLP 240

Query: 252 ANITAVVMLVEIIIASVSAWLFGAAELRVQDLIGGALIIATPWLVRD 298
           A IT+V+ML EI++AS+SAW FGAAELR QDLIGG LIIA PWLVRD
Sbjct: 241 ATITSVIMLAEILVASLSAWWFGAAELRPQDLIGGILIIAAPWLVRD 287


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.140    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 920,688
Number of extensions: 35149
Number of successful extensions: 179
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 219
Effective length of database: 1,217,395
Effective search space: 266609505
Effective search space used: 266609505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)