BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0500.p
         (301 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313423|ref|YP_003777515.1| SAM-dependent methyltransferase...   486   e-138

>gi|300313423|ref|YP_003777515.1| SAM-dependent methyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 299

 Score =  486 bits (1250), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 237/300 (79%), Positives = 257/300 (85%), Gaps = 4/300 (1%)

Query: 1   MSSKKHNKPAAAPATAAAGSSGASPVATIPEIRPGQSVELLKELHILTRDGKLNQDSRRK 60
           MS +  + P   P     G   A       EIRPGQS+ELLKELHILTRDGKLNQDSRRK
Sbjct: 1   MSKQAPSAPGRQPNR---GKPAAESAPQAHEIRPGQSIELLKELHILTRDGKLNQDSRRK 57

Query: 61  LKQVYHLYQFIEPLLQEIRNTHPDVSVVDHGAGKSYLGFILYDLFFKALEGNSRIYGIET 120
           LKQVYHLYQFIEPLLQE+   HPDVS+VDHGAGKSYLGFILYDLFFK L G   IYGIET
Sbjct: 58  LKQVYHLYQFIEPLLQEVLEQHPDVSLVDHGAGKSYLGFILYDLFFKGLPGAPHIYGIET 117

Query: 121 REELVQKSTALAKRLGFPGMSFLNLSVADSIGSTALPEQIDVVTALHACDTATDDAIHFA 180
           REELV+KS  LA RLGF GMSFLNLSVADSI S +LPE+IDVVTALHACDTATDDAIHFA
Sbjct: 118 REELVRKSEELASRLGFGGMSFLNLSVADSISSPSLPEKIDVVTALHACDTATDDAIHFA 177

Query: 181 LKKHAQFIVLVPCCQAEVASVLNRNKGASLGRTSLTELWRHPLHTREFGSQVTNVLRCLQ 240
           L K A+FIVLVPCCQAEVASVLNRNKG SL   SLTE+WRHPLHTREFGSQVTNVLRCLQ
Sbjct: 178 LAKEARFIVLVPCCQAEVASVLNRNKGKSLA-NSLTEIWRHPLHTREFGSQVTNVLRCLQ 236

Query: 241 LEAHGYQVSVTELVGWEHSMKNELIIARYKDLPRKRPTERLQDVLQSLGLEEMGERFFST 300
           LEAHGY+VSVTELVGWEHSMKNELIIA+Y+DLPR+RP ERLQ+VL++LGLEEMG+RFF++
Sbjct: 237 LEAHGYKVSVTELVGWEHSMKNELIIAQYRDLPRRRPAERLQEVLRTLGLEEMGQRFFAS 296


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 812,761
Number of extensions: 30669
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 216
Effective length of database: 1,217,395
Effective search space: 262957320
Effective search space used: 262957320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)