BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0498.p (284 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313365|ref|YP_003777457.1| organic solvents resistance ABC... 440 e-125 gi|300312193|ref|YP_003776285.1| organic solvents resistance ABC... 157 9e-40 gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transport... 152 2e-38 gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 150 1e-37 gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC trans... 137 9e-34 >gi|300313365|ref|YP_003777457.1| organic solvents resistance ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 243 Score = 440 bits (1131), Expect = e-125, Method: Compositional matrix adjust. Identities = 216/241 (89%), Positives = 229/241 (95%) Query: 42 MDFPRGKVIAVMGGSGSGKTTILRLIGGQLRPQSGTLTVDGENVPSLDTRDLYRLRRKMG 101 MDFPRGKV+AVMGGSGSGKTTILRLIGGQLRPQ G + VDGENVP L T+ L+ LRRKMG Sbjct: 1 MDFPRGKVVAVMGGSGSGKTTILRLIGGQLRPQQGKVEVDGENVPDLATKQLFLLRRKMG 60 Query: 102 MLFQNGALFTDMTVFDNVAFPLHEHTDLPEELIRDLVLLKLNAVGLRNAASLKPAEISGG 161 MLFQNGALFTDMTVFDNVAFPL EHTDL E LIRDLVL+KLNAVGLRNAASLKPAEISGG Sbjct: 61 MLFQNGALFTDMTVFDNVAFPLREHTDLDETLIRDLVLMKLNAVGLRNAASLKPAEISGG 120 Query: 162 MARRVALARAIALDPALIMYDEPFAGLDPISMGVTANLIRKLNDALGSTSILVSHDVNES 221 MARRVALARAIALDPALIMYDEPFAGLDPISMGVTANLIR+LNDALGSTSILVSHDVNES Sbjct: 121 MARRVALARAIALDPALIMYDEPFAGLDPISMGVTANLIRRLNDALGSTSILVSHDVNES 180 Query: 222 FGIADYVYFLSAGKIVAQGTPDEMRASQDPYVKQFVHAEADGPVPFHYPGRSLAEDVGLG 281 F IAD+VYFLSAGKIVAQGTP+E+R+S DPYV+QFVHAEADGPVPFHYPG+SLAED+GLG Sbjct: 181 FAIADHVYFLSAGKIVAQGTPEELRSSTDPYVRQFVHAEADGPVPFHYPGKSLAEDLGLG 240 Query: 282 G 282 G Sbjct: 241 G 241 >gi|300312193|ref|YP_003776285.1| organic solvents resistance ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 278 Score = 157 bits (397), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 96/239 (40%), Positives = 146/239 (61%), Gaps = 1/239 (0%) Query: 21 IVEIRDLHFGYGDRPILSGLRMDFPRGKVIAVMGGSGSGKTTILRLIGGQLRPQSGTLTV 80 I+E+R L +G + + L + RG+++ V+GGSG+GK+ +LR I G LRP +G + V Sbjct: 19 IIEVRGLRNQFGTQVVHEQLDLQVRRGEILGVVGGSGTGKSVLLRSIVGLLRPAAGEVRV 78 Query: 81 DGENVPSLDTRDLYRLRRKMGMLFQNGALFTDMTVFDNVAFPLHEHTDLPEELIRDLVLL 140 G+++ +L + R+ G+LFQ GALF+ +TV +N+A PL E+ L + R + + Sbjct: 79 FGQDLTALSSEARSGYERRFGVLFQQGALFSSLTVLENIALPLTEYGGLNADEARGVAAM 138 Query: 141 KLNAVGLRNAASLK-PAEISGGMARRVALARAIALDPALIMYDEPFAGLDPISMGVTANL 199 KL GL AA K PA +SGGM +R ALARA+ALDP ++ DEP AGLDPIS L Sbjct: 139 KLALAGLPIAAGDKYPAALSGGMIKRAALARALALDPDILFLDEPTAGLDPISAAAFDRL 198 Query: 200 IRKLNDALGSTSILVSHDVNESFGIADYVYFLSAGKIVAQGTPDEMRASQDPYVKQFVH 258 I L DALG T LV+HD++ + I D + LS+ +++ + + A D +++Q+ Sbjct: 199 ILTLRDALGLTVFLVTHDLDTLYAICDRIAVLSSRRVLVADRIEAVAAYDDAWIRQYFQ 257 >gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 152 bits (385), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 85/225 (37%), Positives = 134/225 (59%), Gaps = 8/225 (3%) Query: 22 VEIRDLHFGYGDRPILSGLRMDFPRGKVIAVMGGSGSGKTTILRLIGGQLRPQSGTLTVD 81 +E+ + +G L+ + ++FP G++ A++G SG GKTT+LR+I G P SG + +D Sbjct: 3 IEVHHIQKRFGSFTALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVLLD 62 Query: 82 GENVPSLDTRDLYRLRRKMGMLFQNGALFTDMTVFDNVAFPLH--EHTDLPEE-LIRDLV 138 GE+ + R+ R++G +FQ+ ALF MTVF+N+AF L + P E +IR+ V Sbjct: 63 GEDASARHVRE-----RQVGFVFQHYALFKHMTVFENIAFGLRVKPRSQRPSEAVIREKV 117 Query: 139 LLKLNAVGLRNAASLKPAEISGGMARRVALARAIALDPALIMYDEPFAGLDPISMGVTAN 198 L V L A P ++SGG +R+ALARA+A++P +++ DEPF LD Sbjct: 118 KRLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRR 177 Query: 199 LIRKLNDALGSTSILVSHDVNESFGIADYVYFLSAGKIVAQGTPD 243 +R+L+D L TSI V+HD E+ +AD V ++ G++ GTP+ Sbjct: 178 WLRRLHDELHVTSIFVTHDQEEALEVADQVVLMNKGQVEQIGTPE 222 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 150 bits (378), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 138/227 (60%), Gaps = 5/227 (2%) Query: 21 IVEIRDLHFGYGDRPILSGLRMDFPRGKVIAVMGGSGSGKTTILRLIGGQLRPQSGTLTV 80 IV+I+DLH +G +L+G+ +D +G+++A++G SGSGK+T+LR + G + +G + V Sbjct: 4 IVKIKDLHKSFGSNKVLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGDIQV 63 Query: 81 DGENVPSLDTRDLYRLRRKMGMLFQNGALFTDMTVFDNVAFPLHEHTDLPEELIRDLVLL 140 G ++ D +L LR+++G++FQ+ LF +TV N+ L + E + + Sbjct: 64 CGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEQAKTIAHK 123 Query: 141 KLNAVGLRNAASLKPAEISGGMARRVALARAIALDPALIMYDEPFAGLDPISMGVTANLI 200 L VGL N P ++SGG A+RVA+AR++A+ P L+++DE + LDP +TA ++ Sbjct: 124 VLQLVGLENKKDAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDP---ELTAEVL 180 Query: 201 RKLNDAL--GSTSILVSHDVNESFGIADYVYFLSAGKIVAQGTPDEM 245 + + D G T +LV+H++ + +AD + F+ G++ G PDE+ Sbjct: 181 KVMEDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDEL 227 >gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 362 Score = 137 bits (345), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 83/231 (35%), Positives = 130/231 (56%), Gaps = 10/231 (4%) Query: 22 VEIRDLHFGYGD----RPILSGLRMDFPRGKVIAVMGGSGSGKTTILRLIGGQLRPQSGT 77 + + DLH YG PIL G+ M+ RG+V+A++G SGSGKTT+LR + G P++G Sbjct: 4 LSVNDLHLDYGTGAHANPILKGVSMELQRGEVVALLGPSGSGKTTLLRAVAGLESPKAGA 63 Query: 78 LTVDGENVPSLDTRDLYRL---RRKMGMLFQNGALFTDMTVFDNVAFPLHEHTDLPEELI 134 + + V D + + R +G++FQ+ AL+ TV DNVA+ L + P I Sbjct: 64 IDIGKRRV--FDGARNFEMPAEERNLGLVFQSYALWPHKTVADNVAYGL-KLRKTPSGEI 120 Query: 135 RDLVLLKLNAVGLRNAASLKPAEISGGMARRVALARAIALDPALIMYDEPFAGLDPISMG 194 V L+ +GL + P ++SGG +RVA+ARA+ +P +I+ DEP + LD Sbjct: 121 ATRVKAVLSQLGLGHLGERYPHQLSGGQQQRVAIARALVYNPQVILLDEPLSNLDAKLRE 180 Query: 195 VTANLIRKLNDALGSTSILVSHDVNESFGIADYVYFLSAGKIVAQGTPDEM 245 +R+L LG ++++V+HD E+ I+D + L+ G+I QGTP M Sbjct: 181 EARAFLRELIVRLGLSALMVTHDQGEAMAISDRILLLNNGRIEQQGTPQSM 231 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.142 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 932,990 Number of extensions: 40385 Number of successful extensions: 548 Number of sequences better than 1.0e-08: 128 Number of HSP's gapped: 320 Number of HSP's successfully gapped: 139 Length of query: 284 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 200 Effective length of database: 1,222,130 Effective search space: 244426000 Effective search space used: 244426000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)