BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0497.p
         (259 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313364|ref|YP_003777456.1| organic solvents resistance ABC...   421   e-119
gi|300312192|ref|YP_003776284.1| organic solvents resistance ABC...   105   5e-24

>gi|300313364|ref|YP_003777456.1| organic solvents resistance ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 259

 Score =  421 bits (1082), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 235/259 (90%), Positives = 252/259 (97%)

Query: 1   MIAGFLGGIGRSVREFVLGLGFAARMFWTVIRSSGGLWRRPRLITDQIHFIGNYSLVIIA 60
           MIAG + G+GRS+REFV+G+GFA RMF +++ SS GL RRPRLITDQIHFIGNYSLVIIA
Sbjct: 1   MIAGLVSGLGRSLREFVVGVGFAGRMFASMLGSSLGLLRRPRLITDQIHFIGNYSLVIIA 60

Query: 61  VSGLFVGFVLGLQGYYTLNKYGSEQALGLLVALSLTRELGPVVTALLFAGRAGTSLTAEI 120
           VSGLFVGFVLGLQGYYTLNKYGSEQALGLLVALSLTRELGPVVTALLFAGRAGTSLTAEI
Sbjct: 61  VSGLFVGFVLGLQGYYTLNKYGSEQALGLLVALSLTRELGPVVTALLFAGRAGTSLTAEI 120

Query: 121 GLMKAGEQLSAMEMMAVDPLQRVVAPRFWAGVVAMPVLAAIFSAVGVIGGYIVGVLMIGV 180
           GLMKAGEQLSAMEMMAV+PLQRVVAPRFWAGV+AMPVLAAIFSAVGVIGGY+VGVL+IGV
Sbjct: 121 GLMKAGEQLSAMEMMAVNPLQRVVAPRFWAGVIAMPVLAAIFSAVGVIGGYVVGVLLIGV 180

Query: 181 DEGAFWSQMQGGVDVWNDIANGVLKSIVFGIAVTFVALYQGYEAKPTPEGVSRATTRTVV 240
           DEGAFWSQMQGGVDVWNDIANGVLKS+VFG+AVTFVAL+QGYEAKPTPEGV+RATTRTVV
Sbjct: 181 DEGAFWSQMQGGVDVWNDIANGVLKSVVFGVAVTFVALFQGYEAKPTPEGVARATTRTVV 240

Query: 241 IASLMVLGLDFLLTALMFS 259
           IASL+VLGLDFLLTALMFS
Sbjct: 241 IASLLVLGLDFLLTALMFS 259


>gi|300312192|ref|YP_003776284.1| organic solvents resistance ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 380

 Score =  105 bits (261), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 84/258 (32%), Positives = 133/258 (51%), Gaps = 10/258 (3%)

Query: 6   LGGIGRSVREFVLGL-GFAARMFWTVIRSSGGLWRRPR----LITDQIHFIGNYSLVIIA 60
           +G    S+R   LGL GF      T++ S    WR  R     +  QI   G  ++ I++
Sbjct: 123 VGAATLSLRACALGLLGFMGLCLQTLLSS---FWRPSRWRVTAVVAQIEQTGLDAVPIVS 179

Query: 61  VSGLFVGFVLGLQGYYTLNKYGSEQALGLLVALSLTRELGPVVTALLFAGRAGTSLTAEI 120
           +    VG V+   G   L  +G+      LVA S  RE   ++TA+L AGR  +S TA+I
Sbjct: 180 LLTFMVGAVVAFLGATVLANFGASIYTVDLVAFSFLREFAVLLTAILMAGRTASSFTAQI 239

Query: 121 GLMKAGEQLSAMEMMAVDPLQRVVAPRFWAGVVAMPVLAAIFSAVGVIGGYIVGVLMIGV 180
           G MKA E++ A+  + +DP++ +V PR  A +VAMP L  I    G+ GG +V  L + +
Sbjct: 240 GSMKANEEIDAIRALGLDPIKLLVLPRLIALLVAMPALTFIAMLSGLFGGAMVCALSLDI 299

Query: 181 DEGAFWSQMQGGVDVWNDIANGVLKSIVFGIAVTFVALYQGYEAKPTPEGVSRATTRTVV 240
               F S +Q  V + + I  G++K+ +F   V  +   +G++   + + V + TT +VV
Sbjct: 300 SPTMFLSLLQQDVGIRHFIL-GMVKAPLFAFVVAVIGCNEGFKVSGSAQSVGQHTTSSVV 358

Query: 241 IASLMVLGLDFLLTALMF 258
            +  +V+ LD  L AL F
Sbjct: 359 QSIFVVILLD-ALAALFF 375


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.142    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 713,509
Number of extensions: 25946
Number of successful extensions: 147
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 2
Length of query: 259
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 176
Effective length of database: 1,226,865
Effective search space: 215928240
Effective search space used: 215928240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)