BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0490.p (303 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313359|ref|YP_003777451.1| multidrug ABC transporter ATPas... 563 e-162 gi|300311269|ref|YP_003775361.1| multidrug ABC transporter ATPas... 120 1e-28 gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa... 118 5e-28 gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC t... 117 1e-27 gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC t... 117 1e-27 >gi|300313359|ref|YP_003777451.1| multidrug ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 303 Score = 563 bits (1452), Expect = e-162, Method: Compositional matrix adjust. Identities = 271/303 (89%), Positives = 291/303 (96%) Query: 1 MAALQINNVEKRYQSLQALGGVSLSIEEGEFFGLLGPNGAGKTTLISIVAGLNRADSGSV 60 MAALQIN+++KRYQSLQALGGVSL+IEEGEFFGLLGPNGAGKTTLISI+AGLNRADSG+V Sbjct: 1 MAALQINDIKKRYQSLQALGGVSLAIEEGEFFGLLGPNGAGKTTLISIIAGLNRADSGTV 60 Query: 61 TIHGHDVVTDYRAARTKLGVVPQELVFDPFFTVRETLRMQSGYFGLKNNDRWIDEVMDNL 120 TIHGHDVV+DYRAAR KLGVVPQELVFDPFFTVRETLRMQSGYFGL +ND+WIDEVM+NL Sbjct: 61 TIHGHDVVSDYRAARMKLGVVPQELVFDPFFTVRETLRMQSGYFGLSSNDKWIDEVMENL 120 Query: 121 DLTNKADTNMRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVDVELRQTLWKFIGRLNR 180 DLTNKADTNMRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVDVELRQTLW+FIGRLNR Sbjct: 121 DLTNKADTNMRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVDVELRQTLWQFIGRLNR 180 Query: 181 EGHTIVLTTHYLEEAQALCNRIAMLKFGKVVALDSTDALIKRISGSQLVLRLKSGSLPDS 240 EGHTIVLTTHYLEEAQALCNRIAMLKFGKVVALDST+ LI+RISGSQ+VLRLK GSLP+ Sbjct: 181 EGHTIVLTTHYLEEAQALCNRIAMLKFGKVVALDSTEGLIRRISGSQMVLRLKRGSLPEG 240 Query: 241 LRALVTHPEELLSGLKYTLRVNDYNDVEPILSALREGGAVIDDMQLQQADLEDVFIQIMG 300 L++LVTHPEELLSG KYTLRVNDY +VEPIL+ALR GA IDD+QLQQADLEDVFIQIMG Sbjct: 241 LKSLVTHPEELLSGNKYTLRVNDYQEVEPILAALRAAGAEIDDLQLQQADLEDVFIQIMG 300 Query: 301 GVK 303 K Sbjct: 301 DEK 303 >gi|300311269|ref|YP_003775361.1| multidrug ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 913 Score = 120 bits (301), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/236 (33%), Positives = 127/236 (53%), Gaps = 9/236 (3%) Query: 1 MAALQINNVEKRYQSLQALGGVSLSIEEGEFFGLLGPNGAGKTTLISIVAGLNRADSGSV 60 + A ++++V Y AL V L I G GL+GP+G GK+TL+S++AG R +G + Sbjct: 5 ICAARVHDVSHSYGKNPALSHVELDIPGGCMAGLIGPDGVGKSTLLSLIAGARRIRAGRI 64 Query: 61 TIHGHDV--VTDYRAARTKLGVVPQELVFD--PFFTVRETLRMQSGYFGLKNNDRW--ID 114 + G D+ A + +PQ L + P +V E L+ + FG +R ID Sbjct: 65 DVLGGDIGQAAHRDAVGPCIAYMPQGLGKNLYPTLSVEENLQFIARLFGQDAQERRQRID 124 Query: 115 EVMDNLDLTNKADTNMRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVDVELRQTLWKF 174 ++ + L LSGGMK+++ + AL+H P +++LDEPT GVD R W+ Sbjct: 125 DLTHSTGLQPFLARPAGQLSGGMKQKLSLCCALIHDPDLLILDEPTTGVDPLARAQFWEL 184 Query: 175 IGRLNRE--GHTIVLTTHYLEEAQALCNRIAMLKFGKVVALDSTDALIKRISGSQL 228 I RL + G ++++ T Y++EAQA + +A++ G+V+A + AL+ R S L Sbjct: 185 IARLRQRHPGMSVIVATAYMDEAQAF-DWLAVMDQGQVLATGTPAALLARTGASSL 239 Score = 114 bits (285), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 118/230 (51%), Gaps = 5/230 (2%) Query: 3 ALQINNVEKRYQ-SLQALGGVSLSIEEGEFFGLLGPNGAGKTTLISIVAGLNRADSGSVT 61 A++ N+ R+ A+ VS I GE FG LG NG GKTT + ++ GL A SG Sbjct: 271 AIEAENLSMRFADGFTAVDHVSFRIRRGEIFGFLGSNGCGKTTTMKMLTGLLPASSGRAR 330 Query: 62 IHGHDVVTDYRAARTKLGVVPQELVFDPFFTVRETLRMQSGYFGLKNND--RWIDEVMDN 119 + G ++ R ++G + Q +VR+ L + + F L + E+ Sbjct: 331 LFGQEIDPRDVCLRKRVGYMSQSFSLYKDLSVRQNLALHARLFHLPAAQIGPRVAEMARR 390 Query: 120 LDLTNKADTNMRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVDVELRQTLWKFIGRLN 179 L D+ L G+++R+ +A A +H P +++LDEPT+GVD R W+ + L+ Sbjct: 391 FALMPVMDSLAADLPMGIRQRLSLAVATIHGPEILILDEPTSGVDPVARDHFWQLLVTLS 450 Query: 180 REGH-TIVLTTHYLEEAQALCNRIAMLKFGKVVALDSTDALIKRISGSQL 228 R TI L+TH++ EA C+R++M+ GKV+ D+ AL+ + + L Sbjct: 451 RRDKVTIFLSTHFMNEALR-CDRMSMMHAGKVLDSDTPAALMHKRGAATL 499 >gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 118 bits (296), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 77/235 (32%), Positives = 126/235 (53%), Gaps = 19/235 (8%) Query: 4 LQINNVEKRYQSLQALGGVSLSIEEGEFFGLLGPNGAGKTTLISIVAGLNRADSGSVTIH 63 LQ+N++ K + LQ L GV+ ++ +GE FGL+GPNGAGKTT+ +++ GL RA SGS+ + Sbjct: 3 LQLNDISKNFGGLQVLQGVNFNVRQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRFN 62 Query: 64 GHDV-------VTDYRAARTKLGV-VPQELVFDPFFTVRETLRMQSGYF-------GLKN 108 D+ +T+ ART + V +E+ V + G G +N Sbjct: 63 DDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHDHLNYGVASMLLNLGGFRN 122 Query: 109 NDRWID----EVMDNLDLTNKADTNMRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVD 164 ++ E++ + L +KA +LS G +R++ A+AL KP +++LDEP AG++ Sbjct: 123 AEKEARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGMN 182 Query: 165 VELRQTLWKFIGRLNREGHTIVLTTHYLEEAQALCNRIAMLKFGKVVALDSTDAL 219 + L I + + G TI + H + LC RIA+L FGK++A + D + Sbjct: 183 PAEKTELMSEIVNIKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQI 237 >gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 121/228 (53%), Gaps = 19/228 (8%) Query: 4 LQINNVEKRYQSLQALGGVSLSIEEGEFFGLLGPNGAGKTTLISIVAGLNRADSGSVTIH 63 L+I +V KR+ LQAL GV ++IE G+ +GL+GPNGAGKTT +++ GL + D+G+ + Sbjct: 6 LKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGTFELD 65 Query: 64 G--HDVVTDYRAARTKLGVVPQELVFDPFFTVRET------LRMQSGYFG-------LKN 108 G + + A+ + Q + TV E +R + FG + Sbjct: 66 GKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRHKAARE 125 Query: 109 NDRWIDE----VMDNLDLTNKADTNMRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVD 164 + I E ++D + + A R LS G +RR+ +A+AL P ++ LDEP AG++ Sbjct: 126 EEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEPAAGMN 185 Query: 165 VELRQTLWKFIGRLNREGHTIVLTTHYLEEAQALCNRIAMLKFGKVVA 212 + L + + ++ EG TI+L H ++ LCNRI +L +GK +A Sbjct: 186 ATEKLGLRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIA 233 >gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 117 bits (293), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 121/228 (53%), Gaps = 19/228 (8%) Query: 4 LQINNVEKRYQSLQALGGVSLSIEEGEFFGLLGPNGAGKTTLISIVAGLNRADSGSVTIH 63 L+I +V KR+ LQAL GV ++IE G+ +GL+GPNGAGKTT +++ GL + D+G+ + Sbjct: 6 LKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGTFELD 65 Query: 64 G--HDVVTDYRAARTKLGVVPQELVFDPFFTVRET------LRMQSGYFG-------LKN 108 G + + A+ + Q + TV E +R + FG + Sbjct: 66 GKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTRQNVFGAVFRHKAARE 125 Query: 109 NDRWIDE----VMDNLDLTNKADTNMRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVD 164 + I E ++D + + A R LS G +RR+ +A+AL P ++ LDEP AG++ Sbjct: 126 EEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEPAAGMN 185 Query: 165 VELRQTLWKFIGRLNREGHTIVLTTHYLEEAQALCNRIAMLKFGKVVA 212 + L + + ++ EG TI+L H ++ LCNRI +L +GK +A Sbjct: 186 ATEKLGLRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIA 233 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.137 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 939,375 Number of extensions: 39179 Number of successful extensions: 515 Number of sequences better than 1.0e-08: 128 Number of HSP's gapped: 341 Number of HSP's successfully gapped: 144 Length of query: 303 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 218 Effective length of database: 1,217,395 Effective search space: 265392110 Effective search space used: 265392110 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)