BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0484.p
         (437 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313355|ref|YP_003777447.1| histidinol dehydrogenase oxidor...   803   0.0  

>gi|300313355|ref|YP_003777447.1| histidinol dehydrogenase
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 438

 Score =  803 bits (2073), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/437 (90%), Positives = 410/437 (93%)

Query: 1   MGIAIRKLDSTDAGFRQTLSSVLAFEAGEDEAIDRAAAGILADVKARGDAAVLEYTNRFD 60
           M IAIRKLDS DAGFR  LS+VLAFEA EDEAIDRAAA ILADVKARGDAAVLEYT RFD
Sbjct: 1   MSIAIRKLDSADAGFRDQLSAVLAFEASEDEAIDRAAATILADVKARGDAAVLEYTQRFD 60

Query: 61  RLSATAVSALEIGQDELKKALDGLPAARRAALQTAADRVRAYHERQKKECGSDGFLYTEA 120
           RL A +V+ALEIG+D L+ AL GLP ARR ALQTAADRVRAYHERQKKECGSDGFLY EA
Sbjct: 61  RLQAASVAALEIGKDALQAALAGLPEARRHALQTAADRVRAYHERQKKECGSDGFLYREA 120

Query: 121 DGTVLGQKVTPLDRVGIYVPGGKAAYPSSVLMNAIPAKVAGVQEVIMVVPTPDGVKNELV 180
           DGT LGQKVTPLDRVGIYVPGGKAAYPSSVLMNAIPAKVAGVQEVIMVVPTPDGVKNELV
Sbjct: 121 DGTELGQKVTPLDRVGIYVPGGKAAYPSSVLMNAIPAKVAGVQEVIMVVPTPDGVKNELV 180

Query: 181 LAAAAIAGVDRVFTIGGAQAVGALAYGTGTIPQVDKIVGPGNAYVAAAKRRVFGTVGIDM 240
           LAAAAIAGVDRVFTIGGAQAVGALAYGT TIPQVDKIVGPGNAYVAAAKRRVFG VGIDM
Sbjct: 181 LAAAAIAGVDRVFTIGGAQAVGALAYGTATIPQVDKIVGPGNAYVAAAKRRVFGVVGIDM 240

Query: 241 IAGPSEILVICDGSTDPDWIAMDLFSQAEHDELAQSILLCPDADYIAKVEASINKQLDAM 300
           IAGPSEILVICDG+TDPDWIAMDLFSQAEHDELAQSILLCPDADYIAKVEASIN+ LD M
Sbjct: 241 IAGPSEILVICDGATDPDWIAMDLFSQAEHDELAQSILLCPDADYIAKVEASINRLLDDM 300

Query: 301 PRKDVIRTSLTDRGALVKVRDMDEACEIANAIAAEHLEISTEQPQQWADKIRHAGAMFLG 360
           PRKDVIRTSLTDRGALVKVRDM EACEIAN IAAEHLEIS ++ QQWAD+IRHAGAMFLG
Sbjct: 301 PRKDVIRTSLTDRGALVKVRDMAEACEIANMIAAEHLEISAQEAQQWADQIRHAGAMFLG 360

Query: 361 RFSSEALGDYCAGPNHVLPTSRTARFSSPLGVYDFQKRSSIIQVSEAGAQALGKVAAELA 420
           RFSSE+LGDYCAGPNHVLPTSRTARFSSPLGVYDFQKRSSII+VSE GAQ LGK+AAELA
Sbjct: 361 RFSSESLGDYCAGPNHVLPTSRTARFSSPLGVYDFQKRSSIIRVSEEGAQTLGKIAAELA 420

Query: 421 YGEGLQAHARSAELRFK 437
           YGEGLQAHARSAELR K
Sbjct: 421 YGEGLQAHARSAELRLK 437


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,298,543
Number of extensions: 53744
Number of successful extensions: 201
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 349
Effective length of database: 1,203,190
Effective search space: 419913310
Effective search space used: 419913310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)