BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0483.p
         (441 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313354|ref|YP_003777446.1| DNA-methyltransferase [Herbaspi...   464   e-132
gi|300313353|ref|YP_003777445.1| histidinol-phosphate aminotrans...   201   1e-52
gi|300313983|ref|YP_003778075.1| histidinol-phosphate aminotrans...    57   3e-09

>gi|300313354|ref|YP_003777446.1| DNA-methyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 276

 Score =  464 bits (1195), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 217/242 (89%), Positives = 228/242 (94%), Gaps = 3/242 (1%)

Query: 3   WRDRVFCEDALD---GLARIPDGEIDLLIADPPYGLGKDYGNDSDKLDNDAYLAWTEQWI 59
           W DRVFCEDAL    GLARIPDG +DL+IADPPYGLGKDYGNDSDKLD  AYLAWTEQW+
Sbjct: 13  WLDRVFCEDALSAVGGLARIPDGSVDLMIADPPYGLGKDYGNDSDKLDTAAYLAWTEQWV 72

Query: 60  DVALPKLKPNGSLYIFLTWRYSPEIFVMLKRRMTMLNEIVWDRRVPSMGGSTRKYSSVHD 119
           D ALPKLKPNGSLYIFLTWR SPEIFVMLK+RMTM+NEI+WDRRVPSMGGSTR+YSSVHD
Sbjct: 73  DAALPKLKPNGSLYIFLTWRNSPEIFVMLKQRMTMINEIIWDRRVPSMGGSTRRYSSVHD 132

Query: 120 TIGFFARAKDYYFDLDAIRIPYDAQTKKARSRSIFVGAKWLEMGYNPKDVWSVSRLHREH 179
           TIGFFARAKDY+FDLDAIRIPYDAQTKKARSRSIFVGAKWLEMGYNPKDVWSVSRLHREH
Sbjct: 133 TIGFFARAKDYFFDLDAIRIPYDAQTKKARSRSIFVGAKWLEMGYNPKDVWSVSRLHREH 192

Query: 180 KERADHPTQKPLEIVERMIKASCPPGGVVLDPFMGSGTTAVAARRCGRQFVGFELNPAYC 239
           KERADHPTQKPLE+VERM+KASCPPGGVVLDPFMGSGTTAVAARRCGR F GFELNP YC
Sbjct: 193 KERADHPTQKPLEVVERMVKASCPPGGVVLDPFMGSGTTAVAARRCGRHFTGFELNPDYC 252

Query: 240 AV 241
            +
Sbjct: 253 EL 254


>gi|300313353|ref|YP_003777445.1| histidinol-phosphate
           aminotransferase 1 protein [Herbaspirillum seropedicae
           SmR1]
          Length = 372

 Score =  201 bits (510), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 97/145 (66%), Positives = 113/145 (77%)

Query: 264 SLVERIIRADVRALSAYPVPDAAGFVKLDAMENPYTLPQALRDELGQRLSAVTLNRYPVP 323
            L+  +IR  VR   +Y VP A G VKLDAMENPY LP  LR++L QRL+A+ LNRYPVP
Sbjct: 15  QLIANVIRPVVRGWQSYHVPSAEGMVKLDAMENPYLLPAELREQLAQRLAALELNRYPVP 74

Query: 324 SYTLLKEKLCRHMGVPTGFDVLLGNGSDELISILSVACAQAGAKVLAPEPGFVMYAVSAK 383
           SYT LK  +C+ +GVP G+DVLLGNGSDELI++LSVACAQ G  +LAPEPGFVMY VSAK
Sbjct: 75  SYTALKAAICKGLGVPAGYDVLLGNGSDELITLLSVACAQPGRTILAPEPGFVMYGVSAK 134

Query: 384 FAGLEYIGVPLKTDFTLDRDAMLAA 408
            AGLEY+GVPL  D +LD  AMLAA
Sbjct: 135 MAGLEYVGVPLCADLSLDLPAMLAA 159


>gi|300313983|ref|YP_003778075.1| histidinol-phosphate
           aminotransferase 1 protein [Herbaspirillum seropedicae
           SmR1]
          Length = 360

 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 59/121 (48%), Gaps = 5/121 (4%)

Query: 283 PDAAGFVKLDAMENPYTLPQALRDELGQRLSAVTLNRYPVPSYTLLKEKLCRHM---GVP 339
           P  A  VKL+  E+PY  P  L  +   R  + +L  YP P    LK+ + R     GV 
Sbjct: 21  PKIARLVKLNTNESPYG-PSPLALQAIAREVSDSLRLYPNPDAEPLKQAIARRHAADGVS 79

Query: 340 TGFDVLLGNGSDELISILSVACAQAGAKVLAPEPGFVMYAVSAKFAGLEYIGVPLKTDFT 399
              +V +GNGSDE+++    A  Q G  +L P+  +  Y   A    +EY  VPL  DFT
Sbjct: 80  VR-EVFVGNGSDEVLAHAFHALLQHGKPILFPDITYSFYPTYAGLYQVEYRAVPLAEDFT 138

Query: 400 L 400
           L
Sbjct: 139 L 139


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,523,801
Number of extensions: 66190
Number of successful extensions: 177
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 3
Length of query: 441
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 353
Effective length of database: 1,203,190
Effective search space: 424726070
Effective search space used: 424726070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)