BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0479.p
         (202 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313351|ref|YP_003777443.1| glutamine amidotransferase [Her...   365   e-102
gi|300313488|ref|YP_003777580.1| glutamine amidotransferase [Her...   135   3e-33

>gi|300313351|ref|YP_003777443.1| glutamine amidotransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 212

 Score =  365 bits (937), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 174/202 (86%), Positives = 184/202 (91%)

Query: 1   MGNLRSVAQALRHVAPEADVRISGEVADIEAADRVVLPGQGAMPDCMRSLRESGVQDAVI 60
           MGNLRSVAQALRHVAPEADVRISGEVADI AADRVVLPGQGAMPDCMRSLRESGVQDAVI
Sbjct: 11  MGNLRSVAQALRHVAPEADVRISGEVADIRAADRVVLPGQGAMPDCMRSLRESGVQDAVI 70

Query: 61  AAARSKPLFGVCVGEQMLFDWSEEGDTPGLGLLPGKVVRFRLDGQVQEDGSRFKVPQMGW 120
            A+R+KPLFGVCVGEQMLFDWSEEGDTPGLGLLPGKVVRF L+G  Q+DGS FKVPQMGW
Sbjct: 71  EASRTKPLFGVCVGEQMLFDWSEEGDTPGLGLLPGKVVRFDLEGMRQDDGSLFKVPQMGW 130

Query: 121 NRVHQKVAHPLWQGVDEQAYFYFVHSYYAQPGESAHTVGETVYGAPFACAVARDNIFATQ 180
           N VHQ   HPLW+G+ + A+FYFVHSYYA P ESAH VG+T YG  FACAVARDNIFATQ
Sbjct: 131 NHVHQTSRHPLWEGIADNAFFYFVHSYYAVPAESAHVVGQTPYGRDFACAVARDNIFATQ 190

Query: 181 FHPEKSAAAGLQLYRNFVHWKP 202
           FHPEKSA+AGLQLYRNFVHWKP
Sbjct: 191 FHPEKSASAGLQLYRNFVHWKP 212


>gi|300313488|ref|YP_003777580.1| glutamine amidotransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 202

 Score =  135 bits (339), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 76/201 (37%), Positives = 110/201 (54%), Gaps = 14/201 (6%)

Query: 1   MGNLRSVAQALRHVAPEADVRISGEVADIEAADRVVLPGQGAMPDCMRSLRES-GVQDAV 59
           MGNL S+    + +  +A  RI  +   +  A+++VLPG GA    M  + E+ G++ A+
Sbjct: 9   MGNLGSLLNMFKRIGVKA--RIESDPEAVRDAEKLVLPGVGAFDAAMHRINETPGLRAAL 66

Query: 60  --IAAARSKPLFGVCVGEQMLFDWSEEGDTPGLGLLPGKVVRF-RLDGQVQEDGSRFKVP 116
              A     P+ GVC+G Q+L   SEEG  PGLG + G+ +RF R+DG         KVP
Sbjct: 67  DHKALIERVPVIGVCLGMQLLTRSSEEGKLPGLGWIDGEAIRFPRIDG--------LKVP 118

Query: 117 QMGWNRVHQKVAHPLWQGVDEQAYFYFVHSYYAQPGESAHTVGETVYGAPFACAVARDNI 176
            MGWN  H      L   +  +  +YFVHSY+ +     H++  T YG  F  A+ RDNI
Sbjct: 119 HMGWNVAHPATPSALTNDIGIEPRYYFVHSYFVKVDNPVHSLMRTQYGVEFDSAIGRDNI 178

Query: 177 FATQFHPEKSAAAGLQLYRNF 197
           +  QFHPEKS   G+++ +NF
Sbjct: 179 YGAQFHPEKSHRFGMKILQNF 199


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 715,587
Number of extensions: 30534
Number of successful extensions: 91
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 2
Length of query: 202
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,236,335
Effective search space: 149596535
Effective search space used: 149596535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)