BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0477.p
         (254 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313349|ref|YP_003777441.1| imidazole glycerol-phosphate sy...   477   e-136
gi|300313489|ref|YP_003777581.1| imidazoleglycerol-phosphate syn...   195   3e-51
gi|300313350|ref|YP_003777442.1| phosphoribosylformimino-5-amino...    95   5e-21

>gi|300313349|ref|YP_003777441.1| imidazole glycerol-phosphate
           synthase [Herbaspirillum seropedicae SmR1]
          Length = 254

 Score =  477 bits (1228), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 237/254 (93%), Positives = 246/254 (96%)

Query: 1   MTLAKRIIPCLDVTAGRVVKGVNFLELRDAGDPVEIARRYDEQGADEITFLDITASSDGR 60
           M LAKRIIPCLDVTAGRVVKGVNFLELRDAGDPVEIARRYDEQGADE+TFLDITASSDGR
Sbjct: 1   MALAKRIIPCLDVTAGRVVKGVNFLELRDAGDPVEIARRYDEQGADELTFLDITASSDGR 60

Query: 61  GLLLDIIEAVASQVFIPLTVGGGVRAVDDVRRLLNAGADKVGINTSAVTNPQLVEDAASK 120
            L+LDIIEAVASQVFIPLTVGGGVRAV+DVRRLLNAGADKVGINTSAVTNPQLV DAASK
Sbjct: 61  DLILDIIEAVASQVFIPLTVGGGVRAVEDVRRLLNAGADKVGINTSAVTNPQLVADAASK 120

Query: 121 YGSQCIVVAIDAKRTGEGKWEVFTHGGRNATGLDAVEWARKMAQLGAGEILLTSMDRDGT 180
           YGSQCIVVAIDAKR G+GKWEV+THGGR ATGLDAVEWARKMAQLGAGEILLTSMDRDGT
Sbjct: 121 YGSQCIVVAIDAKRAGDGKWEVYTHGGRKATGLDAVEWARKMAQLGAGEILLTSMDRDGT 180

Query: 181 RSGFDLALTRAVSDAVAIPVIASGGVGGLQDLADGIKQGKADAVLAASIFHYGQHTVQEA 240
           +SGFDL LTRAVS+AV+IPVIASGGVGGLQDLADGI +GKADAVLAASIFHYGQHTVQEA
Sbjct: 181 KSGFDLDLTRAVSEAVSIPVIASGGVGGLQDLADGITKGKADAVLAASIFHYGQHTVQEA 240

Query: 241 KRFMADQNIPMRLA 254
           KRFMADQNI MRLA
Sbjct: 241 KRFMADQNISMRLA 254


>gi|300313489|ref|YP_003777581.1| imidazoleglycerol-phosphate
           synthase [Herbaspirillum seropedicae SmR1]
          Length = 253

 Score =  195 bits (496), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 100/230 (43%), Positives = 145/230 (63%)

Query: 3   LAKRIIPCLDVTAGRVVKGVNFLELRDAGDPVEIARRYDEQGADEITFLDITASSDGRGL 62
           L  R+IP L +    +VK   F      GDP    R ++E   DE+ FLDI AS + +G 
Sbjct: 2   LRTRVIPALLLQHESLVKTQRFSTFDYVGDPCNTVRIFNELEVDELFFLDIAASREKKGP 61

Query: 63  LLDIIEAVASQVFIPLTVGGGVRAVDDVRRLLNAGADKVGINTSAVTNPQLVEDAASKYG 122
            L ++  +A++ F+PL  GGG+R++DD R + + G +KV +NT A+ NP L+ + A++YG
Sbjct: 62  NLQLLADIANECFMPLGYGGGIRSLDDARSVFSIGFEKVAVNTHALENPSLISEIATEYG 121

Query: 123 SQCIVVAIDAKRTGEGKWEVFTHGGRNATGLDAVEWARKMAQLGAGEILLTSMDRDGTRS 182
           SQ +VV++D K    G   V +H GR+ TG D V WA++  +LGAGE+ LT++DR+GT S
Sbjct: 122 SQAVVVSVDVKGGVLGGQTVRSHSGRHNTGRDPVAWAQEAERLGAGELFLTAIDREGTWS 181

Query: 183 GFDLALTRAVSDAVAIPVIASGGVGGLQDLADGIKQGKADAVLAASIFHY 232
           GFD+ L + V+DAV+IPVIA GG G L D+   +KQ  A AV   S+  Y
Sbjct: 182 GFDIDLVKKVTDAVSIPVIAHGGAGSLSDIRKVVKQAGASAVALGSMVVY 231


>gi|300313350|ref|YP_003777442.1|
           phosphoribosylformimino-5-aminoimidazole carboxamide
           ribonucleotide (ProFAR) isomerase [Herbaspirillum
           seropedicae SmR1]
          Length = 265

 Score = 95.1 bits (235), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 115/224 (51%), Gaps = 29/224 (12%)

Query: 7   IIPCLDVTAGRVVK--------GVNFLELRDAGDPVEIARRYDEQGADEITFLDITASSD 58
           +IP +D+  G  V+           F E     DP E+A  + +QGA  +  +D+  +  
Sbjct: 3   LIPAIDLKDGHCVRLKQGDMDQATVFSE-----DPAEMALHWLKQGARRLHLVDLNGAFA 57

Query: 59  GR----GLLLDIIEAVASQVF------IPLTVGGGVRAVDDVRRLLNAGADKVGINTSAV 108
           G+      +  I++AVAS         IP+ +GGG+R +D + R L+ G   + I T+AV
Sbjct: 58  GKPKNEAAVKAILKAVASFAEENEVEEIPVQLGGGIRDLDTIERYLDDGLSYIIIGTAAV 117

Query: 109 TNPQLVEDAASKYGSQCIVVAIDAKRTGEGKWEVFTHGGRNATGLDAVEWARKMAQLGAG 168
            NP  + DA S +  Q I+V +DAK   +GK  V T G    +G + V+ A+K    G  
Sbjct: 118 KNPGFLHDACSAFPGQ-IIVGLDAK---DGK--VATDGWSKLSGHEVVDLAQKFEGYGCE 171

Query: 169 EILLTSMDRDGTRSGFDLALTRAVSDAVAIPVIASGGVGGLQDL 212
            I+ T + RDG   G ++  T  ++ AV IP+IASGGV  + D+
Sbjct: 172 AIVYTDIGRDGMMGGVNIEATVRLAQAVTIPIIASGGVHNVGDV 215


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 762,140
Number of extensions: 31640
Number of successful extensions: 132
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 3
Length of query: 254
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 171
Effective length of database: 1,226,865
Effective search space: 209793915
Effective search space used: 209793915
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)