BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0471.p
         (257 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313343|ref|YP_003777435.1| Sec-independent protein translo...   380   e-107

>gi|300313343|ref|YP_003777435.1| Sec-independent protein
           translocase [Herbaspirillum seropedicae SmR1]
          Length = 256

 Score =  380 bits (977), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/257 (81%), Positives = 240/257 (93%), Gaps = 2/257 (0%)

Query: 1   MAEEQKTSGSEESFISHLIELRSRVVKASAAVLIIFLCMMPWSAHIFDLLAAPMISALPV 60
           MAEE   + +E++FISHLIELRSR+VKA+A VL++FLCMMP++AHIFD+LAAPMI ALP 
Sbjct: 1   MAEEN--TQAEDTFISHLIELRSRIVKAAAVVLVVFLCMMPFAAHIFDVLAAPMIHALPA 58

Query: 61  GSKMIATGVITPFLIPVKVTMLMAFMIALPWVLYQMWAFVAPGLYSHEKRLVAPLVISSS 120
           GSKMIATGVITPFLIP+KVTML+A +++LPWVLYQ+WAFVAPGLY+HEKRL+APLVISSS
Sbjct: 59  GSKMIATGVITPFLIPIKVTMLVAVLVSLPWVLYQLWAFVAPGLYTHEKRLIAPLVISSS 118

Query: 121 LLFLMGVAFCYFFVFGVVFPFINNFAPKSVSVAPDIDSYVDFVLTMFLAFGITFEVPIIV 180
           +LF+ GVAFCYFFVFGVVFPFINNFAPKSVSVAPDIDSYVDFVLTMF+AFG+TFEVP+IV
Sbjct: 119 VLFVAGVAFCYFFVFGVVFPFINNFAPKSVSVAPDIDSYVDFVLTMFVAFGVTFEVPVIV 178

Query: 181 IVLVRMGLVPLAKLKQIRPYVVVGAFVIAAVVTPPDIMSQLMLAVPLCLLYEVGLLVAPI 240
           IVLVRMGLVPLAKLKQ+RPYV+VGAF+IAAVVTPPD+MSQLMLAVPL LLYEVGLLVAPI
Sbjct: 179 IVLVRMGLVPLAKLKQVRPYVIVGAFIIAAVVTPPDVMSQLMLAVPLVLLYEVGLLVAPI 238

Query: 241 FEKATRAPEEREDAVGS 257
           FE+AT+AP     +  S
Sbjct: 239 FERATQAPATEAGSSTS 255


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.142    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 714,371
Number of extensions: 27106
Number of successful extensions: 109
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 174
Effective length of database: 1,226,865
Effective search space: 213474510
Effective search space used: 213474510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 129 (54.3 bits)