BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0468.p
         (223 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313337|ref|YP_003777429.1| hypothetical protein Hsero_4051...   327   6e-91

>gi|300313337|ref|YP_003777429.1| hypothetical protein Hsero_4051
           [Herbaspirillum seropedicae SmR1]
          Length = 254

 Score =  327 bits (837), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 160/223 (71%), Positives = 183/223 (82%), Gaps = 1/223 (0%)

Query: 1   VEGRGEIGLLVSGVTASQALIEAALDLKADAILVHHGYFWRGEDARVTGTKHKRLKALLA 60
           VEGR  +G +V+GVTAS ALIEAAL  +ADAILVHHGYFWRGED RV G K +RLK LL+
Sbjct: 33  VEGRATVGRVVTGVTASLALIEAALQWQADAILVHHGYFWRGEDMRVIGQKQRRLKLLLS 92

Query: 61  NDVNLFAYHLPLDGHPELGNNAQLARHLSLVGSDRFGEDKLGWLGVPEADANIVTVGDLA 120
           ND+NLF YHLPLD HPELGNNAQLAR L    + RFG++ +GWLG   A  ++ T  DLA
Sbjct: 93  NDINLFGYHLPLDSHPELGNNAQLARRLDFDATGRFGDNDIGWLGRCHA-PSVKTAADLA 151

Query: 121 HLIERRLGRAPLLIGNAGQPLGKIAWCTGAAQGFLGDAIAAGASVYISGEISEPTVHLAR 180
            LIE+RLGR PLLIG+  Q +G++AWCTGAAQG LG+AI AGASVYISGEISEPTVHLAR
Sbjct: 152 MLIEKRLGRMPLLIGDPQQAVGQVAWCTGAAQGMLGEAIEAGASVYISGEISEPTVHLAR 211

Query: 181 ETGVAYIAAGHHATERYGVQALGAHVADHFGIRHQFVDIDNPV 223
           ETG  Y+AAGHHATERYG+QALG HVA HFGI H+F+DIDNPV
Sbjct: 212 ETGTVYLAAGHHATERYGIQALGEHVAAHFGIEHRFIDIDNPV 254


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.139    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 802,164
Number of extensions: 37447
Number of successful extensions: 135
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 141
Effective length of database: 1,231,600
Effective search space: 173655600
Effective search space used: 173655600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)