BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0460.p
         (258 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311333|ref|YP_003775425.1| Co/Zn/Cd efflux system componen...   234   4e-63

>gi|300311333|ref|YP_003775425.1| Co/Zn/Cd efflux system component
           protein [Herbaspirillum seropedicae SmR1]
          Length = 329

 Score =  234 bits (598), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 158/279 (56%), Positives = 195/279 (69%), Gaps = 22/279 (7%)

Query: 1   MALLADGFHMATHAGALAIAAMAYSFAKRNAASAKYSFGTGKVGDLAGFASALILGMVSI 60
           MALLADGFHMATH GALAIAA AY FA+R+A   ++SFGTGKVGDLAGFASAL+L +++I
Sbjct: 49  MALLADGFHMATHTGALAIAAGAYVFARRHAHDQRFSFGTGKVGDLAGFASALVLAVIAI 108

Query: 61  GIAVESVMRVITPTTVAFDEAIFVAVIGLLVNIVSAFML--------------------- 99
           GI   S+ R+ +P+ V F EAI +AVIGL+VNI SA +L                     
Sbjct: 109 GIGGGSLWRLASPSPVEFGEAIVIAVIGLMVNIASALLLMEGHHHDHAHHDAHAHHAHHT 168

Query: 100 SGGSHGHHDHGHAHEHHHHHHGHDNNLRSAYVHVLADALTSVLAIAALLAGRYYGMIWLD 159
               H  H HG  H  HHH H HDNNLRSAY+HV+ADALTSVLAIAALLAG Y G  WLD
Sbjct: 169 HHTHHSDHGHGKDHPPHHHAHAHDNNLRSAYLHVVADALTSVLAIAALLAGLYLGWTWLD 228

Query: 160 PAMGIVGAIVIARWAYTLMKDTAKMLLDTTDESVADSIRRKLAAFDGTAITDLHVWKVGP 219
           PAMG+VGA+VIARW+Y+L++ +A +LLD TDE VA  IR+ LA  +   I DLHVW++GP
Sbjct: 229 PAMGVVGAVVIARWSYSLLRASATVLLDVTDEQVATRIRQALAD-EPVQIDDLHVWRIGP 287

Query: 220 QARAAIVSLTISAPEVEPEIRAALLTIDNLDHLTIEAHK 258
            ARAAIVSL+  A + E  +R  L  ++ L HL++E  +
Sbjct: 288 TARAAIVSLSGPAEQEETPLRQKLAALEQLQHLSLEYRR 326


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 720,276
Number of extensions: 26546
Number of successful extensions: 156
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 175
Effective length of database: 1,226,865
Effective search space: 214701375
Effective search space used: 214701375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)