BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0451.p (258 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311770|ref|YP_003775862.1| branched-chain amino acid ABC t... 336 1e-93 gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPa... 178 5e-46 gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC t... 172 3e-44 gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC t... 171 6e-44 gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa... 171 7e-44 >gi|300311770|ref|YP_003775862.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 336 bits (861), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 162/257 (63%), Positives = 203/257 (78%), Gaps = 4/257 (1%) Query: 1 MSLLQVRDLGKSFGGVKALDDVSFDLPEGQLLALLGPNGAGKSTCFNILNGQYKPDAGSV 60 MSLLQV+ L KSFGGV AL+++SF LP GQ+LAL+GPNGAGKSTCFN++NGQ +PD G V Sbjct: 1 MSLLQVQQLSKSFGGVAALEELSFALPAGQMLALIGPNGAGKSTCFNLINGQLRPDRGEV 60 Query: 61 HFDGREISNARSSMKPREVWRLGVGRTFQISATFGSMTVVDNIRMALISRERKLFSLWRP 120 DG+ I+ + R +WR GVGRTFQ+SA F SMTV+ +++ AL+S R+L+ LWRP Sbjct: 61 LLDGQSITG----LDARRIWRRGVGRTFQVSAAFSSMTVLQSVQAALLSHHRRLWQLWRP 116 Query: 121 AASMYRDEAMELLAQVGMAAQAQRPCGVLAYGDVKRVELAIALANRPRLLLMDEPTAGMA 180 A S++R +AMELL QVGMAAQAQR C VLAYGD+KRVELA+AL+N PRLLLMDEPTAGMA Sbjct: 117 ADSLFRQQAMELLDQVGMAAQAQRACAVLAYGDIKRVELAMALSNAPRLLLMDEPTAGMA 176 Query: 181 PGERNDLMALTKELVVARKLSVLFTEHSMDVVFAFADRMIVLARGRIIAQGDGETIRNHP 240 ER LMALT+ LV R ++VLFTEHSMDVVFA ADR++VLARG+++A G +R Sbjct: 177 TQERQALMALTRRLVNERGIAVLFTEHSMDVVFAHADRILVLARGQLVADGAPAVVRADA 236 Query: 241 QVQEVYLGTGKTFGKEA 257 +V+E+Y G+G +FG A Sbjct: 237 RVRELYFGSGASFGGAA 253 >gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 256 Score = 178 bits (451), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 96/252 (38%), Positives = 151/252 (59%), Gaps = 14/252 (5%) Query: 3 LLQVRDLGKSFGGVKALDDVSFDLPEGQLLALLGPNGAGKSTCFNILNGQYKPDAGSVHF 62 +L+ R+L K F G A+ V+ + G + AL+GPNGAGK+TCFN+L P +G + F Sbjct: 5 ILETRNLTKEFKGFTAVSAVNLQIERGHIHALIGPNGAGKTTCFNLLTKFLVPTSGQILF 64 Query: 63 DGREISNARSSMKPREVWRLGVGRTFQISATFGSMTVVDNIRMALISRERKL---FSLWR 119 +GR+I+ P ++ R G+ R+FQISA F M+V++N+R+ L +RKL F W+ Sbjct: 65 NGRDITMD----APAQIARQGIIRSFQISAVFPHMSVLENVRIGL---QRKLGTSFHFWK 117 Query: 120 PAASMYR--DEAMELLAQVGMAAQAQRPCGVLAYGDVKRVELAIALANRPRLLLMDEPTA 177 S+ + + AM+LL +V + + A L YG + +E+A LA P L+L+DEPT Sbjct: 118 NGESLKQLDERAMQLLEEVDLTSFAHTTTVDLPYGRKRALEIATTLAMEPELMLLDEPTQ 177 Query: 178 GMAPGERNDLMALTKELVVARKLSVLFTEHSMDVVFAFADRMIVLARGRIIAQGDGETIR 237 GM + + + AL K++ R ++L EH+M V+ DR+ VL RG ++A+G E + Sbjct: 178 GMGHEDVDRVTALIKKVSAGR--TILMVEHNMSVIAGICDRISVLQRGALLAEGSYEEVS 235 Query: 238 NHPQVQEVYLGT 249 +PQV E Y+G+ Sbjct: 236 RNPQVMEAYMGS 247 >gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 172 bits (436), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 99/259 (38%), Positives = 154/259 (59%), Gaps = 18/259 (6%) Query: 2 SLLQVRDLGKSFGGVKALDDVSFDLPEGQLLALLGPNGAGKSTCFNILNGQYKPDAGSVH 61 +LL++RD+ K FGG++AL+ V + GQ+ L+GPNGAGK+T FN++ G Y+PD G+ Sbjct: 4 TLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGTFE 63 Query: 62 FDGREISNARSSMKPREVWRLGVGRTFQISATFGSMTVVDNIRMALISRERK--LFSLWR 119 DG+ S + P EV + G+ RTFQ FG MTV++N+ + R R+ +++R Sbjct: 64 LDGKPYSPS----APHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTRQNVFGAVFR 119 Query: 120 PAA-----SMYRDEAMELLAQVGMAAQAQRPCGVLAYGDVKRVELAIALANRPRLLLMDE 174 A + R+++ +LL VG+ A+R L+YGD +R+E+A ALA P+LL +DE Sbjct: 120 HKAAREEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDE 179 Query: 175 PTAGMAPGERNDLMALTKELVV---ARKLSVLFTEHSMDVVFAFADRMIVLARGRIIAQG 231 P AGM E+ L +EL+V A ++L EH + ++ +R+ VL G+ IA+G Sbjct: 180 PAAGMNATEKLGL----RELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEG 235 Query: 232 DGETIRNHPQVQEVYLGTG 250 ++ +P V E YLG G Sbjct: 236 VPADVQKNPAVIEAYLGAG 254 >gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 171 bits (433), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 98/259 (37%), Positives = 154/259 (59%), Gaps = 18/259 (6%) Query: 2 SLLQVRDLGKSFGGVKALDDVSFDLPEGQLLALLGPNGAGKSTCFNILNGQYKPDAGSVH 61 +LL++RD+ K FGG++AL+ V + GQ+ L+GPNGAGK+T FN++ G Y+PD G+ Sbjct: 4 TLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGTFE 63 Query: 62 FDGREISNARSSMKPREVWRLGVGRTFQISATFGSMTVVDNIRMALISRERK--LFSLWR 119 DG+ S + P EV + G+ RTFQ FG MTV++N+ + R ++ +++R Sbjct: 64 LDGKPYSPS----APHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFR 119 Query: 120 PAA-----SMYRDEAMELLAQVGMAAQAQRPCGVLAYGDVKRVELAIALANRPRLLLMDE 174 A + R+++ +LL VG+ A+R L+YGD +R+E+A ALA P+LL +DE Sbjct: 120 HKAAREEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDE 179 Query: 175 PTAGMAPGERNDLMALTKELVV---ARKLSVLFTEHSMDVVFAFADRMIVLARGRIIAQG 231 P AGM E+ L +EL+V A ++L EH + ++ +R+ VL G+ IA+G Sbjct: 180 PAAGMNATEKLGL----RELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEG 235 Query: 232 DGETIRNHPQVQEVYLGTG 250 ++ +P V E YLG G Sbjct: 236 VPADVQKNPAVIEAYLGAG 254 >gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 171 bits (432), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 91/253 (35%), Positives = 151/253 (59%), Gaps = 12/253 (4%) Query: 3 LLQVRDLGKSFGGVKALDDVSFDLPEGQLLALLGPNGAGKSTCFNILNGQYKPDAGSVHF 62 LLQ+ D+ K+FGG++ L V+F++ +G++ L+GPNGAGK+T FN++ G + +GS+ F Sbjct: 2 LLQLNDISKNFGGLQVLQGVNFNVRQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRF 61 Query: 63 DGREISNARSSMKPREVWRLGVGRTFQISATFGSMTVVDNIRMALISR-----ERKLFSL 117 + +I ++ P ++ G+ RTFQ F MT+++N+ + + L +L Sbjct: 62 NDDDI----GAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHDHLNYGVASMLLNL 117 Query: 118 --WRPAASMYRDEAMELLAQVGMAAQAQRPCGVLAYGDVKRVELAIALANRPRLLLMDEP 175 +R A R+ A+ELL+ V + +A L+YG+ +++E A ALA +P+LLL+DEP Sbjct: 118 GGFRNAEKEARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEP 177 Query: 176 TAGMAPGERNDLMALTKELVVARKLSVLFTEHSMDVVFAFADRMIVLARGRIIAQGDGET 235 AGM P E+ +LM+ + R ++ EH M V +R+ VL G+IIA+G + Sbjct: 178 VAGMNPAEKTELMSEIVN-IKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQ 236 Query: 236 IRNHPQVQEVYLG 248 I+N+ +V E YLG Sbjct: 237 IKNNQEVIEAYLG 249 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.137 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 810,257 Number of extensions: 33811 Number of successful extensions: 505 Number of sequences better than 1.0e-08: 126 Number of HSP's gapped: 295 Number of HSP's successfully gapped: 139 Length of query: 258 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 175 Effective length of database: 1,226,865 Effective search space: 214701375 Effective search space used: 214701375 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)