BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0450.p (241 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC t... 320 5e-89 gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC t... 204 6e-54 gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC t... 204 7e-54 gi|300314072|ref|YP_003778164.1| amino acid ABC transporter ATPa... 197 7e-52 gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC t... 194 8e-51 >gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 233 Score = 320 bits (821), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 157/223 (70%), Positives = 180/223 (80%) Query: 6 ADILLRVEHLNAWYGQAHILFDVGFEVGRGEVVALMGRNGAGKSTTMKAVMGLLDHADGK 65 + LL+V+ L+ WY AHILF + E+ GEVVALMGRNGAGKSTT+KA+MGLL+ G+ Sbjct: 2 SQCLLQVQGLHGWYADAHILFGLDLEIRAGEVVALMGRNGAGKSTTLKALMGLLERRQGQ 61 Query: 66 VSFRGRDISRAQPHKIARMGMGYVPEDRRIFSELSVLENLEVGRQPPRPDAFVWTPQQLF 125 + GRDI + PH+ AR+G+GYVPEDRRIF+ELSVLENLE GRQPPRP A WTPQ LF Sbjct: 62 IRLAGRDIGKLAPHQRARLGLGYVPEDRRIFTELSVLENLETGRQPPRPGAPHWTPQALF 121 Query: 126 ELFPNLGEMPQRAGGRMSGGEQQMLTVARTLMGNPYLVLLDEPSEGVAPVIVEQMAEMIL 185 ELFPNLG MPQR GGRMSGGEQQMLT+ARTLMGNP L+LLDEPSEGVAPVIVEQMA MI Sbjct: 122 ELFPNLGAMPQRLGGRMSGGEQQMLTIARTLMGNPRLLLLDEPSEGVAPVIVEQMAAMIQ 181 Query: 186 RLKQAGMAILLSEQNLHFAGLVSDRAYILENGHIRYQGTMAEL 228 LK++G+AILL EQNLHFA LV DR Y+L+ G I GT A L Sbjct: 182 ELKRSGIAILLCEQNLHFASLVCDRGYLLDQGRIVAAGTPASL 224 >gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 204 bits (518), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 105/234 (44%), Positives = 155/234 (66%), Gaps = 4/234 (1%) Query: 8 ILLRVEHLNAWYGQAHILFDVGFEVGRGEVVALMGRNGAGKSTTMKAVMGLLDHADGKVS 67 ++L+VE ++ +YG++HIL V +V GEVV L+GRNGAGK+TT+K+++G++ G+V Sbjct: 1 MILQVEDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPVQGRVL 60 Query: 68 FRGRDISRAQPHKIARMGMGYVPEDRRIFSELSVLENLEVGRQPPRPDAFVWTPQQLFEL 127 F G+ IS +KIA G+ VPE R IF L+V ENL + + W ++++ + Sbjct: 61 FEGQLISGLPSYKIAARGVCLVPEHRGIFKLLTVEENLTMAARKESA----WGLEEIYAI 116 Query: 128 FPNLGEMPQRAGGRMSGGEQQMLTVARTLMGNPYLVLLDEPSEGVAPVIVEQMAEMILRL 187 FP L E + GG++SGGEQQML +AR LM +P +++LDEP EG+APVIV+++ I ++ Sbjct: 117 FPRLKERRKNGGGQLSGGEQQMLAIARALMTHPRVLMLDEPVEGLAPVIVDEIVAQIRQI 176 Query: 188 KQAGMAILLSEQNLHFAGLVSDRAYILENGHIRYQGTMAELARDEAVRRAYLAV 241 K GM+I+L EQNL ++DR YI+E G I Y G+ AE DE V+ YL V Sbjct: 177 KATGMSIILVEQNLEVCTQLADRHYIVEQGRIVYHGSNAEFLADEGVKDRYLGV 230 >gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 238 Score = 204 bits (518), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 111/238 (46%), Positives = 154/238 (64%), Gaps = 3/238 (1%) Query: 5 QADILLRVEHLNAWYGQAHILFDVGFEVGRGEVVALMGRNGAGKSTTMKAVMGLLDHADG 64 + +LL V L A YG + +L V V RGE+V+++GRNGAG+ST +KA+MGLL + G Sbjct: 3 KTSLLLSVTGLQAGYGHSRVLHGVDLTVQRGEIVSILGRNGAGRSTLLKALMGLLP-SRG 61 Query: 65 KVSFRGRDISRAQPHKIARMGMGYVPEDRRIFSELSVLENLEVGRQP-PRPDAFVWTPQQ 123 F GRDIS H IAR+GMGYVPE R +F LSV +NL +GR+P P+P W Sbjct: 62 DCRFEGRDISGLPTHAIARLGMGYVPESREVFPTLSVAQNLLLGRKPGPQPGRG-WCEDD 120 Query: 124 LFELFPNLGEMPQRAGGRMSGGEQQMLTVARTLMGNPYLVLLDEPSEGVAPVIVEQMAEM 183 + LFP L + Q A +SGGEQQML + R L+GNP L+L+DEP+EG+AP +VEQ+A Sbjct: 121 IHALFPALYKRRQVAAAALSGGEQQMLALGRALLGNPSLLLVDEPTEGLAPQMVEQVARA 180 Query: 184 ILRLKQAGMAILLSEQNLHFAGLVSDRAYILENGHIRYQGTMAELARDEAVRRAYLAV 241 + L+ G+A+LL EQ A +S R Y++ G + ++GT L+ E V+R +LA+ Sbjct: 181 LQELRTRGVAVLLVEQKQALALELSQRVYVMGRGEMVFEGTPTGLSAQETVQREWLAL 238 >gi|300314072|ref|YP_003778164.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 197 bits (501), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 100/218 (45%), Positives = 142/218 (65%), Gaps = 1/218 (0%) Query: 2 SGVQADILLRVEHLNAWYGQAHILFDVGFEVGRGEVVALMGRNGAGKSTTMKAVMGLLDH 61 S A ++L++ L +WYG++HIL +V V +GEVV L+GRNGAG++TT++++MGL+ Sbjct: 4 SSSSAPLVLQISDLQSWYGESHILHNVNLNVHQGEVVTLLGRNGAGRTTTLRSIMGLVGT 63 Query: 62 ADGKVSFRGRDISRAQPHKIARMGMGYVPEDRRIFSELSVLENLEVGRQPPRPDAFVWTP 121 G + G++ HKIA G+GY PE+R IFS LS ENL + + D + + Sbjct: 64 RKGSIKINGQETINLATHKIAHHGVGYCPEERGIFSSLSAEENLMLPPFVSKTDKGM-SI 122 Query: 122 QQLFELFPNLGEMPQRAGGRMSGGEQQMLTVARTLMGNPYLVLLDEPSEGVAPVIVEQMA 181 +++E+FPNL E G R+SGGEQQML VAR L L+LLDE SEG+APVIV+ +A Sbjct: 123 DEIYEMFPNLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQALA 182 Query: 182 EMILRLKQAGMAILLSEQNLHFAGLVSDRAYILENGHI 219 MI LK G I++ EQN FA ++DR Y++E+G I Sbjct: 183 RMITTLKAKGYTIVMVEQNFRFAAPLADRFYVMEHGQI 220 >gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 194 bits (492), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 102/237 (43%), Positives = 153/237 (64%), Gaps = 7/237 (2%) Query: 9 LLRVEHLNAWYGQAHILFDVGFEVGRGEVVALMGRNGAGKSTTMKAVMGLLDHADGKVSF 68 +L + +L+A YG+ +L + EV +G+VV L+G NGAGK+TTM+A+ G++ G+V+ Sbjct: 1 MLTISNLHAAYGKVEVLHGISMEVPKGKVVTLIGSNGAGKTTTMRAISGMIKPKGGEVTL 60 Query: 69 RGRDISRAQPHKIARMGMGYVPEDRRIFSELSVLENLEVGRQP------PRPDAFVWTPQ 122 G++I+ HKIAR G+ + PE RR+F+ +SV +NL +G P P+ D + Sbjct: 61 GGKNITGLDSHKIARFGLAHSPEGRRVFATMSVTDNLLLGAFPRFTRARPKGD-IAHDLE 119 Query: 123 QLFELFPNLGEMPQRAGGRMSGGEQQMLTVARTLMGNPYLVLLDEPSEGVAPVIVEQMAE 182 + ELFP L E + G +SGGEQQML +AR +M NP ++LLDEPS G+AP++V+++ Sbjct: 120 RALELFPRLKERQSQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEVFR 179 Query: 183 MILRLKQAGMAILLSEQNLHFAGLVSDRAYILENGHIRYQGTMAELARDEAVRRAYL 239 +I+RLK+ G+ +LL EQ A V+D Y+LENG I G +L D AV+ AYL Sbjct: 180 IIVRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAAYL 236 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.138 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 811,059 Number of extensions: 36140 Number of successful extensions: 473 Number of sequences better than 1.0e-08: 122 Number of HSP's gapped: 310 Number of HSP's successfully gapped: 134 Length of query: 241 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 158 Effective length of database: 1,226,865 Effective search space: 193844670 Effective search space used: 193844670 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)